Basic Information

Insect: Polypedilum vanderplanki
Gene Symbol: -
Assembly: GCA_018290095.1
Location: CM031380.1:6808817-6811763[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 2.1 98 3.7 0.1 2 23 8 29 7 29 0.90

2 27 3.8e-05 0.0017 18.7 1.7 1 23 35 57 35 57 0.97

3 27 1.1e-05 0.00051 20.3 0.1 1 23 63 85 63 85 0.98

4 27 0.0007 0.032 14.7 1.5 1 23 92 114 92 114 0.99

5 27 0.0002 0.0092 16.4 2.7 1 23 148 171 148 171 0.97

6 27 0.00061 0.028 14.8 0.1 1 23 177 199 177 199 0.98

7 27 9 4.1e+02 1.7 1.6 1 15 206 217 206 226 0.72

8 27 3.5 1.6e+02 3.0 4.9 1 23 231 254 231 254 0.96

9 27 0.00035 0.016 15.6 0.9 3 23 262 282 261 282 0.98

10 27 0.00048 0.022 15.2 3.2 1 23 312 335 312 335 0.97

11 27 1.6e-06 7.3e-05 23.0 0.9 3 23 347 367 345 367 0.97

12 27 0.0093 0.43 11.1 3.4 2 23 474 496 473 496 0.96

13 27 3.9e-05 0.0018 18.6 2.4 1 23 504 527 504 527 0.97

14 27 0.00038 0.017 15.5 2.2 3 23 532 553 531 553 0.96

15 27 0.0014 0.062 13.8 0.7 1 23 561 584 561 584 0.93

16 27 0.00016 0.0072 16.7 1.7 1 23 589 612 589 612 0.95

17 27 0.034 1.6 9.3 2.4 1 23 618 640 618 641 0.95

18 27 0.0012 0.054 14.0 2.4 1 23 652 675 652 675 0.97

19 27 0.19 8.9 7.0 1.7 2 23 686 708 685 708 0.91

20 27 0.054 2.5 8.7 0.5 2 23 717 738 717 738 0.97

21 27 0.00076 0.035 14.6 0.0 1 23 742 764 742 764 0.96

22 27 0.00085 0.039 14.4 4.1 1 23 774 796 774 796 0.98

23 27 4.4e-05 0.002 18.4 3.8 1 23 803 825 803 825 0.97

24 27 5.9e-07 2.7e-05 24.3 0.6 1 23 830 852 830 852 0.98

25 27 6.4e-05 0.0029 17.9 3.3 1 23 858 880 858 880 0.99

26 27 0.022 1 10.0 0.9 3 20 889 906 888 910 0.85

27 27 0.0029 0.13 12.7 4.4 1 20 916 935 916 939 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	2.1	98	3.7	0.1	2	23	8	29	7	29	0.90
2	27	3.8e-05	0.0017	18.7	1.7	1	23	35	57	35	57	0.97
3	27	1.1e-05	0.00051	20.3	0.1	1	23	63	85	63	85	0.98
4	27	0.0007	0.032	14.7	1.5	1	23	92	114	92	114	0.99
5	27	0.0002	0.0092	16.4	2.7	1	23	148	171	148	171	0.97
6	27	0.00061	0.028	14.8	0.1	1	23	177	199	177	199	0.98
7	27	9	4.1e+02	1.7	1.6	1	15	206	217	206	226	0.72
8	27	3.5	1.6e+02	3.0	4.9	1	23	231	254	231	254	0.96
9	27	0.00035	0.016	15.6	0.9	3	23	262	282	261	282	0.98
10	27	0.00048	0.022	15.2	3.2	1	23	312	335	312	335	0.97
11	27	1.6e-06	7.3e-05	23.0	0.9	3	23	347	367	345	367	0.97
12	27	0.0093	0.43	11.1	3.4	2	23	474	496	473	496	0.96
13	27	3.9e-05	0.0018	18.6	2.4	1	23	504	527	504	527	0.97
14	27	0.00038	0.017	15.5	2.2	3	23	532	553	531	553	0.96
15	27	0.0014	0.062	13.8	0.7	1	23	561	584	561	584	0.93
16	27	0.00016	0.0072	16.7	1.7	1	23	589	612	589	612	0.95
17	27	0.034	1.6	9.3	2.4	1	23	618	640	618	641	0.95
18	27	0.0012	0.054	14.0	2.4	1	23	652	675	652	675	0.97
19	27	0.19	8.9	7.0	1.7	2	23	686	708	685	708	0.91
20	27	0.054	2.5	8.7	0.5	2	23	717	738	717	738	0.97
21	27	0.00076	0.035	14.6	0.0	1	23	742	764	742	764	0.96
22	27	0.00085	0.039	14.4	4.1	1	23	774	796	774	796	0.98
23	27	4.4e-05	0.002	18.4	3.8	1	23	803	825	803	825	0.97
24	27	5.9e-07	2.7e-05	24.3	0.6	1	23	830	852	830	852	0.98
25	27	6.4e-05	0.0029	17.9	3.3	1	23	858	880	858	880	0.99
26	27	0.022	1	10.0	0.9	3	20	889	906	888	910	0.85
27	27	0.0029	0.13	12.7	4.4	1	20	916	935	916	939	0.91

Sequence Information

Coding Sequence: atgaataaaaataagcaaattgTGTGCGAGGTGTGTGGAGAACTGATAGATGAGGATAAATATAAAAGACATATAAAAAACGGACATAAAGATAAAAGAGATTTTCGATGTGATATCTGTGCAAAAGAATTCACAagCAATTATAATTTACAATATCACATTGCACATCAtttgaatgagagaaattttatttgtaatgaATGTCCTCGAGCTTACAACACATCAGCTGATCTTGTTCAACATCAAAGAATTCACGAGAAACAGAGAGATCCTTACAAATGTGAGgaatgcaatttattttttgaaattcgtAGTCGATACAACACACATATGAGAATTCACAAAACAACTGTAAAAGGACCAAAAGTTTGCCCtgtttgcaataaaaatgttatggATGTTAAAAGACATCATGACACAGTTCATATGAATATAAGGAATCACGAATGtgatttttgctttaaaaaattcaacaaaaaatccGGCTTAGAGCGTCATGTATTGACTGTTcatgaaaaacaaaagaattttatatgtGAAATTTGCAATGCGGCTTTTggagaaaaatctttaatgttGCGTCATATAAAAAGACACTCTGCTGTTAAAACTTCTTTCTATTGCACAATTTGTAAAAAGTATGTAAGTCAAATCAAAGAACATTATAATACGACACACAAAGATTTGCCTCATAGTTGTGAGTTTTGTTATCGACGGTTtttgaaaagaagagaataCAATAATCATGTAATGACTCGTcacacaaaaataagaaaatggcTCTGTCAATTATGTGGAAAAGGATTTGTAGAAATGTATCAACTCAAGagacattttaaaactcaCATTAATGTTGATCGTGTTACGGAAGAAGATGTTGAAAAACTTAtagaaaatcttgaaaattcaaaacgcaaaaaagttgcaaaaaattatgattgcgACTTTtgtaataagaaatttaagaaaaagtaTGACATTGATAGACACATGCAATCACGTCATAAAGATCAAAAGAAACTTGGAGTTTCAGTGATTTGTGATAAATGCGGAAAATCTTTTGATCGATTTTCAACATTAGAAAAACATTTGAGAAATCATCTtgattttatagaaattaaagGAGAAGAACATACTGAAAGTGAAACtgatgaaaggaaaaataattttgactttactgaagaagaaagaaaaattgtgccCTTAGAAATTGATGTTGAAACgataacaattaaaaaagaaccagaatttattgattataatgatgatgatcattCTTTTGAAGGTTTTTcacaaaatgataatttagAGATAAAAAGTGAAGATGATAATCTAGAATTAAAAGATGAGGCAGAAGAAAATCATCCAGTTGAAAAACCTGAAGACATtgaggagaaaaagaaagaaaaacttcaaattcGTTGTAAAGTTTGTCACAATATtttcacaacaaaaaatgaatttagaGAACATTTTATGACACAACATGCAggtgaaaataaaacttcataTGAATGCAAAGAATGTCAAAAAgtatttgataataaaaaaactttaattagtcattttaaaagaacACATGAGAGAAATGATTGCACTGAATGCGAAGAAATATTCTCATCAAAAAGTGAgcttgaaaaacattttcaaaaatgtcatgatgaagaagaaaaagatcaaTTTATGTGCAGTTATTGTGGAAAAATTCTAATGActgaaagaaatttgaagCTTCACATTCATgcaattcataaaaatcttcGTTATGACTGCACAGTATGCTCAAAATCTTTTACTTATAAGTCTGCAATGTATCGTCATCGAGATAGAGAGCatggaaaaggaaaaatttttcaatgtgatAAATGTCCTCAAAGAGTTGGTACAAAACATGAATTAATACTTCACAATGAGAGACACCATAATTCAATGCGTGAAATTGCAAAGCCCGAGTATATGTGTGTTCATTGTGGAATTTgttttccatcatcatttgTCTTATCACGACATGAAAGAAGAATTCATGGAGTTAATGGTGACATTGATGATCAAAAAGAATGTGGAATTTGTCATGaacaatttaaagatttttattggaAAAGAAAGCACACAGCTCAAGTACATTTAAATGGAAAGAGAATAATGCGACGCTGTCAATATTGTTCAGCagaatttaaactttatatagattttaaaaatcatattgaAAGTCAtgttggaatttttatatgtacaATCTGTGGTGAACCTTTTAACGACTTACAAGAACTTTCACTTCATGGACAAATTCATAAGAAAATCGAATCGACattaagaaaatatatttgtGATCATTGCGGCCATAgattatttacaaaagttcAACTTCAGCAGCACATGCTGAAACATACTCAAAATTTTGACGTTCATTATTGTGATGTTTGtggtaaaagttttaaatttgcttCATCACTTTATACTCATCGAAAATATCATGGTGAAGGAGAATTTGTATGCTCGTACTGTAGTAGAAGATTTGCAAGAAATTCTGATTTAGTCAATCATATTCGAGTTCATAGTGGCGAAAAACCTTTTAAaTGTCAAGTATGCGGCAAAAATTTTGCTCAAAAGCAAGCactttattatcatcatcagaCTCATCCTGAAACGAGAGCTAGTGCAAATTGCAAGGAATGTAATATTACATTCTCTGATAGGAAGCAGTTGAAATTTCATGAGGAACAAGTGCATCCTGATTCTCGACCATTTAGGTGCTTTGTCTGTAACATGACTTTTAAATATGAACATAATTTAAGAAGACACAACACTGATAAACacaaagtttaa
Protein Sequence: MNKNKQIVCEVCGELIDEDKYKRHIKNGHKDKRDFRCDICAKEFTSNYNLQYHIAHHLNERNFICNECPRAYNTSADLVQHQRIHEKQRDPYKCEECNLFFEIRSRYNTHMRIHKTTVKGPKVCPVCNKNVMDVKRHHDTVHMNIRNHECDFCFKKFNKKSGLERHVLTVHEKQKNFICEICNAAFGEKSLMLRHIKRHSAVKTSFYCTICKKYVSQIKEHYNTTHKDLPHSCEFCYRRFLKRREYNNHVMTRHTKIRKWLCQLCGKGFVEMYQLKRHFKTHINVDRVTEEDVEKLIENLENSKRKKVAKNYDCDFCNKKFKKKYDIDRHMQSRHKDQKKLGVSVICDKCGKSFDRFSTLEKHLRNHLDFIEIKGEEHTESETDERKNNFDFTEEERKIVPLEIDVETITIKKEPEFIDYNDDDHSFEGFSQNDNLEIKSEDDNLELKDEAEENHPVEKPEDIEEKKKEKLQIRCKVCHNIFTTKNEFREHFMTQHAGENKTSYECKECQKVFDNKKTLISHFKRTHERNDCTECEEIFSSKSELEKHFQKCHDEEEKDQFMCSYCGKILMTERNLKLHIHAIHKNLRYDCTVCSKSFTYKSAMYRHRDREHGKGKIFQCDKCPQRVGTKHELILHNERHHNSMREIAKPEYMCVHCGICFPSSFVLSRHERRIHGVNGDIDDQKECGICHEQFKDFYWKRKHTAQVHLNGKRIMRRCQYCSAEFKLYIDFKNHIESHVGIFICTICGEPFNDLQELSLHGQIHKKIESTLRKYICDHCGHRLFTKVQLQQHMLKHTQNFDVHYCDVCGKSFKFASSLYTHRKYHGEGEFVCSYCSRRFARNSDLVNHIRVHSGEKPFKCQVCGKNFAQKQALYYHHQTHPETRASANCKECNITFSDRKQLKFHEEQVHPDSRPFRCFVCNMTFKYEHNLRRHNTDKHKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01249337;
90% Identity: -
80% Identity: -