Basic Information

Insect: Polypedilum pembai
Gene Symbol: -
Assembly: GCA_014622435.1
Location: JACWBX010001749.1:25829-28746[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 1.3 58 4.4 0.1 2 23 8 29 7 29 0.91

2 26 0.00011 0.0051 17.1 1.7 1 23 35 57 35 57 0.96

3 26 6.1e-06 0.00028 21.1 0.1 1 23 63 85 63 85 0.98

4 26 0.0021 0.097 13.1 3.9 1 23 92 114 92 114 0.99

5 26 0.0002 0.009 16.4 2.7 1 23 148 171 148 171 0.97

6 26 0.001 0.048 14.1 0.2 1 23 177 199 177 199 0.98

7 26 3.4 1.6e+02 3.0 4.9 1 23 231 254 231 254 0.96

8 26 0.00034 0.016 15.6 0.9 3 23 262 282 261 282 0.98

9 26 0.00023 0.011 16.2 3.2 1 23 312 335 312 335 0.97

10 26 1.1e-05 0.00053 20.3 0.3 3 23 347 367 345 367 0.97

11 26 0.0017 0.08 13.4 3.7 2 23 465 487 464 487 0.96

12 26 0.00015 0.007 16.7 4.1 1 23 495 518 495 518 0.96

13 26 0.00083 0.038 14.4 2.4 1 23 521 544 521 544 0.94

14 26 0.0013 0.06 13.8 0.7 1 23 552 575 552 575 0.93

15 26 0.00012 0.0056 17.0 1.1 1 23 580 603 580 603 0.96

16 26 0.029 1.3 9.6 2.7 1 23 609 631 609 632 0.95

17 26 0.008 0.37 11.3 4.2 1 23 643 666 643 666 0.96

18 26 0.19 8.7 7.0 1.7 2 23 677 699 676 699 0.91

19 26 0.029 1.4 9.5 0.5 2 23 708 729 708 729 0.97

20 26 0.00044 0.02 15.3 0.0 1 23 733 755 733 755 0.96

21 26 0.00027 0.012 16.0 2.4 1 23 765 787 765 787 0.98

22 26 0.00012 0.0053 17.1 3.0 1 23 794 816 794 816 0.97

23 26 2.7e-08 1.2e-06 28.5 0.4 1 23 821 843 821 843 0.98

24 26 0.00016 0.0074 16.6 3.7 1 23 849 871 849 871 0.99

25 26 0.0019 0.087 13.3 0.7 3 23 880 901 878 901 0.90

26 26 0.0059 0.27 11.7 4.6 1 20 907 926 907 930 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	1.3	58	4.4	0.1	2	23	8	29	7	29	0.91
2	26	0.00011	0.0051	17.1	1.7	1	23	35	57	35	57	0.96
3	26	6.1e-06	0.00028	21.1	0.1	1	23	63	85	63	85	0.98
4	26	0.0021	0.097	13.1	3.9	1	23	92	114	92	114	0.99
5	26	0.0002	0.009	16.4	2.7	1	23	148	171	148	171	0.97
6	26	0.001	0.048	14.1	0.2	1	23	177	199	177	199	0.98
7	26	3.4	1.6e+02	3.0	4.9	1	23	231	254	231	254	0.96
8	26	0.00034	0.016	15.6	0.9	3	23	262	282	261	282	0.98
9	26	0.00023	0.011	16.2	3.2	1	23	312	335	312	335	0.97
10	26	1.1e-05	0.00053	20.3	0.3	3	23	347	367	345	367	0.97
11	26	0.0017	0.08	13.4	3.7	2	23	465	487	464	487	0.96
12	26	0.00015	0.007	16.7	4.1	1	23	495	518	495	518	0.96
13	26	0.00083	0.038	14.4	2.4	1	23	521	544	521	544	0.94
14	26	0.0013	0.06	13.8	0.7	1	23	552	575	552	575	0.93
15	26	0.00012	0.0056	17.0	1.1	1	23	580	603	580	603	0.96
16	26	0.029	1.3	9.6	2.7	1	23	609	631	609	632	0.95
17	26	0.008	0.37	11.3	4.2	1	23	643	666	643	666	0.96
18	26	0.19	8.7	7.0	1.7	2	23	677	699	676	699	0.91
19	26	0.029	1.4	9.5	0.5	2	23	708	729	708	729	0.97
20	26	0.00044	0.02	15.3	0.0	1	23	733	755	733	755	0.96
21	26	0.00027	0.012	16.0	2.4	1	23	765	787	765	787	0.98
22	26	0.00012	0.0053	17.1	3.0	1	23	794	816	794	816	0.97
23	26	2.7e-08	1.2e-06	28.5	0.4	1	23	821	843	821	843	0.98
24	26	0.00016	0.0074	16.6	3.7	1	23	849	871	849	871	0.99
25	26	0.0019	0.087	13.3	0.7	3	23	880	901	878	901	0.90
26	26	0.0059	0.27	11.7	4.6	1	20	907	926	907	930	0.91

Sequence Information

Coding Sequence: ATGAGTAAAAAAAAGCAAATTGTGTGCGAGGTTTGTGGAGAACTTATAGATGAAGATAAATATAAAAAACATATAAGAAATGGACATAAAGATAAAAGAGATTTTCGCTGTGATATCTGTGCAAAAGAATTTACAAGCAATTATAATTTACAATATCATGTCGCACATCATTTAAATGAAAGAAATTTTGTATGCAATGAATGTCCACGAGCTTACAACACATCAGCTGATCTTGTTCAACATCAAAGAATACATGAGAAACAGCGAGATCCTTACAAATGTGAGCACTGCAATTTATTCTTTGAAATTCGTAGTCGATACAATACTCATATGAGAATTCACAAAACAACTGTTAAAGGACCAAAAATTTGTCCTGTATGCAATAAAAATGTTTTGGATGTCAAAAGACATCATGAAACTGTTCATATGAACATAAGAAATCATGAATGTGATTTTTGTTTCAAGAAATTCAACAAAAAATCAGGTCTGGAACGTCATGTTTTGACTGTTCATGAAAAACAAAAGAATTTTGTATGTGAAATTTGCAATGCAGCATTTGGTGAAAAATCTTTGATGTTGCGTCATACAAAAAGACATTCAGCTGTGAAAACAAGTTTTTACTGTACAATATGTAAAAAATATGTTAGTGAAATCAAAGAACATTATAATACGACACACAAAGATTTGCCTCATAGTTGCGAGTTCTGTTATCGGAGATTTTTAAAGAGAAGAGAATACAACAATCATGTCATGACTCGTCATACGAAAATGAGAAAATGGCTATGTCAATTGTGTGGAAAAGGCTTTGTTGAAATGTATCAGTTGAAGAGACATTTTAAGACTCATATTAATGTTGATCGTGTAACAGAAGAAAATATTGAGAAACTTATAGAAAATCTTGAAAATTCAAAACCTAAAAAAATTGCAAAAAATTATAATTGTGATTTTTGTGATAAAAAATTTAAGAAAAAATATGATATTGACAGACACATGAATTCACGTCATAAAAATCAAAAGAAACTTCAAAATCCAGTGATTTGTGATAAATGTGGCAAAACTTTTATTCGACTTTCATCAATTGAAAAACATTTAAAAATTCATTTGAATTCAACTGATATTAAAGAAGAAGAAGAAGAAGAAAATTCTGATAATGAAATTGAAATTGATTATGTTGAAGAAGAAAGAAAAATTGTGCCATTAGAGATAAATGTTGAATCAATAACAATTAAAAAAGAACCAGAATTTATAGATTTTGATGATGCTGAACCTTCTTTTGAAGGATTTTTACAAGATGACAATTTAGAAATAAAAACTGAAGATGAAGATGAGAAAGAAGAAGAAAAAGTTCAGCTAACAATAAAAACTGAAGAAGTCGATGAAAAAATTCAAATTCGTTGCAAAGTTTGTCACAATATTTTTACAAGCAAAGATGAATTTCGAAAACACTTTATGACACAACATGCAGGTGACAATGAAACATCATATGACTGCAAAGAGTGTCACAAAACATTTGATAATAAAAAAGCTTTAATTAGTCATTTTAAACGAACTCATGAGCGCTATGATTGCAATGAATGTGAGGAAAAATTCTCATCAAAAATTGAACTTGAAAAGCATTTTGAAAAATGTCACGATGTGGATGAAAAAGATCAATTCATGTGCAGTTATTGTGGTAAAATTCTCATGACAGAAAGAAATTTGAAACTTCACATTCATGCAATTCACAAAAATCTTCGTTATGAATGCACAGTTTGTTCAAAGCCTTTCACTTACAAATCTGCCATGTATCGTCATCGTGATCGAGAACATGGCAAAGGAAAACTTTATCAATGTGATAAATGTCCACAAAGAGTTGGCACAAAGCACGAATTAATGCTTCATAATGAAAGACATCACAATTCAATGCGTGAAATTGCAAAACCAGAACATATGTGTGTTCATTGTGGAATTTGTTTTCCTTCATCATTTGTCTTATCAAGGCATGAAAGAAGAATTCATGGAGTTAATGGTGATATTGATGATCAAAAAGAATGTGGAATTTGTCATGAACAATTTAAAGATTTTTATTGGAAAAGAAAGCACACAGCTCAAGTACATTTAAATGGAAAAAGAATTATGAGACGTTGTCAGTATTGTTCAGCTGAATTTAAACTTTATGTAGATTTTAAAAATCATATTGAAAGTCATGTTGGAATTTTCATCTGTACAATTTGTGGTGAACCTTTTAATGACTTACAAGAACTCTCAGTTCATGGACAAATTCATAAGAAAATTGACAGCAAATTAAGGAAATATATTTGTGACTATTGTGGTCATCGTTTGTTTACAAAAGTTCAACTCCAGCAGCACATGCTTAAACATACTCAAAATTTTGATATTCATTATTGTGATGTCTGTGGCAAAGGATTCAAATTTGCTTCCTCACTTTACACTCATCGAAAGTATCATGGCGAGGGAGAGTTTGTATGTACATATTGCGGAAAGAAATTTGCTCGAAATTCAGATTTAGTAAATCACATTCGAGTTCATTCGGGAGAAAAGCCATTCAAATGTCAAGTGTGTGACAAAAATTTCGCTCAGAAGCAAGCACTTTATTATCATCATCAAACTCATCCAGAAACGAGAGCTAGTTCAAACTGTAAAGAATGTAACATTATTTTTTCAGATAGAAAACAATTGAAACTTCATGAAGAACAAAATCATCCTGAAAAAAGACCATTCAGATGTTTTGTTTGCAACATGACGTTTAAATTTGAACATAATTTAAGAAGGCATAACACTGACAAACATTTTAAGATCAAAGATTAA
Protein Sequence: MSKKKQIVCEVCGELIDEDKYKKHIRNGHKDKRDFRCDICAKEFTSNYNLQYHVAHHLNERNFVCNECPRAYNTSADLVQHQRIHEKQRDPYKCEHCNLFFEIRSRYNTHMRIHKTTVKGPKICPVCNKNVLDVKRHHETVHMNIRNHECDFCFKKFNKKSGLERHVLTVHEKQKNFVCEICNAAFGEKSLMLRHTKRHSAVKTSFYCTICKKYVSEIKEHYNTTHKDLPHSCEFCYRRFLKRREYNNHVMTRHTKMRKWLCQLCGKGFVEMYQLKRHFKTHINVDRVTEENIEKLIENLENSKPKKIAKNYNCDFCDKKFKKKYDIDRHMNSRHKNQKKLQNPVICDKCGKTFIRLSSIEKHLKIHLNSTDIKEEEEEENSDNEIEIDYVEEERKIVPLEINVESITIKKEPEFIDFDDAEPSFEGFLQDDNLEIKTEDEDEKEEEKVQLTIKTEEVDEKIQIRCKVCHNIFTSKDEFRKHFMTQHAGDNETSYDCKECHKTFDNKKALISHFKRTHERYDCNECEEKFSSKIELEKHFEKCHDVDEKDQFMCSYCGKILMTERNLKLHIHAIHKNLRYECTVCSKPFTYKSAMYRHRDREHGKGKLYQCDKCPQRVGTKHELMLHNERHHNSMREIAKPEHMCVHCGICFPSSFVLSRHERRIHGVNGDIDDQKECGICHEQFKDFYWKRKHTAQVHLNGKRIMRRCQYCSAEFKLYVDFKNHIESHVGIFICTICGEPFNDLQELSVHGQIHKKIDSKLRKYICDYCGHRLFTKVQLQQHMLKHTQNFDIHYCDVCGKGFKFASSLYTHRKYHGEGEFVCTYCGKKFARNSDLVNHIRVHSGEKPFKCQVCDKNFAQKQALYYHHQTHPETRASSNCKECNIIFSDRKQLKLHEEQNHPEKRPFRCFVCNMTFKFEHNLRRHNTDKHFKIKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01250349;
90% Identity: -
80% Identity: -