Pvan014243.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- lrrfip2
- Assembly
- GCA_018290095.1
- Location
- CM031379.1:26878744-26881306[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.29 5.1e+03 -3.6 0.0 177 193 66 88 52 117 0.54 2 3 1.2e-107 2.2e-103 345.7 39.7 1 299 157 444 157 445 0.92 3 3 0.057 1e+03 -1.3 4.1 216 245 470 498 448 519 0.50
Sequence Information
- Coding Sequence
- atggatgaattaaaaaataatccatTACGGATTGTCGAGGATGACATTCCGTTGACGATATCGAATAACGATAACGATAGTGATAATGATTCGAATATTGGTGAGGTCTTTGATTTCAGTGCCAGTGATATAGAAGAACTTGAAGGTTGCACAgatattgaagaaaagaaaaagcgaAATAGCTTATTAATTATTGAAGATAAAGATCTGATTATGGAGACGAATGAAGATTTTAATAACAACATTCATCGTCTATCGTTGCAAATTGAGAGCGGTGGCGACAGTGACAGTCTTGTAATGACAAATGAGGCTATTAATCGCACAATTATTCGAATTGGTTCAGGTAGTTGCAATGAATATACTGACAATAACAAACAACAAGAAAATGAAGCAATCAGTGATAAAGATGAAAGTGAGAGTGAAGCTGACAATGTAATAGTTAATATTCTAGGACAAATCGACGAAATAGCTGAAGCACGATTAGCAGCAAAGAGACAAGCAAGAGCAGAAGCGCGTGAAATACGCATGAGAGAACTGGATCGACAGCAGAAAGAACTGGAACAAAATGCAGATAGAGCCTACGACATGCAGCAATCGGAGGCGTTGTCGACGCCTCGTTCACGATTGACAGTCAATAATAATCATTTGAGCTCTCGAGGAAACTCAATGACGCCGTCATCAAGACGAAGTAGTGAAGATTCACTAGAGGAAGAAGGAAGAAGTTTGAGAGATCTCAGGCATGAGTTAAAggaCGCAGAAGAGCGTTTCCGAAAAGCAATGATAACAAACGCCCAACTTGATAATGAACGTTCCTCACAAGCATATCAAATAGACTTACTTAAAGATAAGTTAGAAGAAATGGAAGAGACTTATGCACAATTACAGCGTGAGCATCGAGAAAAGACACGAGCGCATGATGCATTAAAGAGACAAAATGCAAAACTCGCAGAGGAACTGAAACTCGTTCAAGGACAATTAAATGAGCGCGATACGCTGATAGCTGATTATGGTTTAGTTATTATAGTTGTGGAGAATGAAGATGGTACTGATGCCAAACGTGTTCTAGTCTCAAATGAAAATGCTCAGCTTTTGAATACAACAGAGGGATCAATAGATGTACGACTCAAAAAGTTTACAGAGGAGAAACAGGAACTACAAAATGAAGTTCAGAAATTGCAACAGCAATTAAATGACATCAAAACACGTGGACGTCGTTCAAGTTCCATCAATGGAATtgtagatgatgatgattatgaagaTGCTCAACgtgAAGCTAATAAAACCATAAATGACTATAAATATCGACTACAAAAAGCTGAACAAGAAATTGCAAGTCTTCAAGCAAGCTTAGCACGTTCAGAGACTCAGGTTATTCGTTATAAAAGTACAGCGGAAGCAGCTGAAAAAGCAGAAGCTGAACTGAAAGTTGAAAGGAGGAAATTACAGCGAGAGAATCGTGAAGCAATGGAGAGACTTGAGGAGCTGGAAACATCAAATAATCATTTACTGAAGCGATTGGACAAGCTAAAGAATGCCAAAAGTGCATTACTCAAAGATCtatga
- Protein Sequence
- MDELKNNPLRIVEDDIPLTISNNDNDSDNDSNIGEVFDFSASDIEELEGCTDIEEKKKRNSLLIIEDKDLIMETNEDFNNNIHRLSLQIESGGDSDSLVMTNEAINRTIIRIGSGSCNEYTDNNKQQENEAISDKDESESEADNVIVNILGQIDEIAEARLAAKRQARAEAREIRMRELDRQQKELEQNADRAYDMQQSEALSTPRSRLTVNNNHLSSRGNSMTPSSRRSSEDSLEEEGRSLRDLRHELKDAEERFRKAMITNAQLDNERSSQAYQIDLLKDKLEEMEETYAQLQREHREKTRAHDALKRQNAKLAEELKLVQGQLNERDTLIADYGLVIIVVENEDGTDAKRVLVSNENAQLLNTTEGSIDVRLKKFTEEKQELQNEVQKLQQQLNDIKTRGRRSSSINGIVDDDDYEDAQREANKTINDYKYRLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKVERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -