Pvan005882.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- bab1
- Assembly
- GCA_018290095.1
- Location
- CM031381.1:19849224-19856779[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-12 4.2e-09 36.0 0.0 3 43 475 515 473 517 0.90 2 2 3.7 4.3e+03 -2.5 0.1 4 18 611 624 611 628 0.79
Sequence Information
- Coding Sequence
- ATGGGTAGTGGAAATGATATGAATAATGGCGCCGCCAAAAGTGGCACAGGTGTATGGTCATCAGATGGTCATGGATATTGCCTCAGATGGAACAATCATAAATCGAATCTCGTTGAAATATTGGAAGCACTCATTAAAATGGAATGTTATGTAGATTGCACAATTTATGTTGATAATCATGTGCAATTTAAGGCACATCGTGTTGTGCTTGCCGCGTGTTCACCATACTTTCAAGCTATACTACAAGATGCTCCACAAGATCATTGCAGTATCATTTTTCCAGGTGTCCAAGAATTTGAAATGAGAACTTTATTAGAATACATTTATGCTGGTGAGGTTAATATCGCAGAATCACAAATTCCTCGCATAatgaaaatagcaaaaatgCTTGAAGTCAAAGGACTGCTCGATATGGTTGATCTCACAAGTAATATCAgtcagcagcaacaacaaccaATTTCTGCACCACCAAATCTCTTTCGACAGGAATCACATGCCAGTATATTATCAGAAAATAAACGCGACAATCAAACTTCATCTTTTCCACTTCATCATCCCTTAACACACTCATCACCAATAATTTCAACATCGACAAAGATCTCATCAGCACAGAGTTCATCATCGCCGCCATATAATTATAAATCATCGCCATATGTTGCAAGTTTATACTCGCAAAGTCCAAGTGGTGCACGTGATTTAATAGCTGGTCCAGGTATGCCCAATCAAGAGATGGGAGATGATGAAAGAGGACGAAATTGGCCACCACCTTTACCATTATCACTTGCAAGATCAGCTCAATCAATGCTTAGCTCTGTATATGAAACTGGCTCAGACATGAATCCATTAAAACGCAAAAAACTTTCATCGATAAATTCAATGCTAATGACACGTGATACACCGATACTACGAAATGTTCTTGCTCAATCGAATGCCGCTGACTCATCTCAAGGTGGCGTACATCCACAAAACGCCAATAGCCCAACTCGTGGCGACCTCTCAAATCGAAACGATGGCAATGGAAATGGAAGCGATAACATCGAAAATAATGACACCAATAATAACGAAAATAATGGAAATAATGCTGGAAATGCGAGTGGCGGAAATAATGGATCCGTTTATGTTAGTTATGTTCGCAAGAGTGGCGATCGCAGTTATCACTCATCAAATGGCAGCGACAATTCTGATAAAAAATATAAAGATGAAGAACCATCATCACCACTTACTGAAAGATCATTCGATGATGAATCAATGAATGATTCAAGACAACGTGTATCACCACCAGAATTTGATATGAGAATTCCTGCTTATTTGCAACAACAAGCACAATTTCATCAAGCTCAATATCAACACCAAAGTGGAGGTCAAGGTAGTGGATCAAGTTCACAAAAACCTGAATGGAAGCGATATAAGCAATATACTCGTAATGATATTATGTCCGCAATTGAGTGTGTTCGCAATGGAATGAGCGCGCTTCAGGCAAGTCGCAAATTTGGAGTGCCATCACGTACATTATATGATAAAGTAAAGAAGTTGGGAATAACGACAGGAACGCCCAGAAATCGATCGTCGTCATCAAAACGAGATCCAGGTCCGAGTTCAAGCAGTGCTGCATTTCCTTATGGATCATTGAGTGGAGCAGCTGGTGCCTTTTTATATCCAAATCAAGACAATCAATTATCACAGTCACAAGATTTCGATTCTGAACTAGAAAATGAGCTCAAAATTCATCGACCAAATCCACATGCAGGTCTTCTTGATCCCGTTTTTCTACAGAAATTAGCACAAGAAGCTCGCAGTGATGAATTTAGAGGTGACGCCTTGCATGCAATGGCTTTAGCTGCAGCAGCTCATGCTCAATTCAATGGAATGGGATCAACTTCTCGTTCTCATGATTCACCAAGTGCCAGTGTTCTCTCAAAATTCATGAATCGCCATAGTGAAAGCATAGAAATGGAACGTGAACGTTTAGATCGTGAAAGAAGTCGTTCAAATGGTGATCAAAcgtcattaattaaaaatgaaccaGTTGATGATAGCGATGAAGATATGGAAAAGGCAGAAAATTTATCGCTTTCAAAATGTGAATCTCCACCAAATATAACACCACCACCGCAAGCTCAAACACCTCCTTCATTTGAAGCACGTGGTGTAATTGTGCCACCAATGAAGTATACATCATCACCAAGATCAGAGCCTTCATCAACTACACCACCAAGTATAAGCGAGCAGGCTCTATCATTAGAAAAAAGTGAGTGTAAACAGCAAAGCTTCAATAATGATGCTCCTATTGCATTAACACCGACAACTACAGCCAATTATGATGATTAA
- Protein Sequence
- MGSGNDMNNGAAKSGTGVWSSDGHGYCLRWNNHKSNLVEILEALIKMECYVDCTIYVDNHVQFKAHRVVLAACSPYFQAILQDAPQDHCSIIFPGVQEFEMRTLLEYIYAGEVNIAESQIPRIMKIAKMLEVKGLLDMVDLTSNISQQQQQPISAPPNLFRQESHASILSENKRDNQTSSFPLHHPLTHSSPIISTSTKISSAQSSSSPPYNYKSSPYVASLYSQSPSGARDLIAGPGMPNQEMGDDERGRNWPPPLPLSLARSAQSMLSSVYETGSDMNPLKRKKLSSINSMLMTRDTPILRNVLAQSNAADSSQGGVHPQNANSPTRGDLSNRNDGNGNGSDNIENNDTNNNENNGNNAGNASGGNNGSVYVSYVRKSGDRSYHSSNGSDNSDKKYKDEEPSSPLTERSFDDESMNDSRQRVSPPEFDMRIPAYLQQQAQFHQAQYQHQSGGQGSGSSSQKPEWKRYKQYTRNDIMSAIECVRNGMSALQASRKFGVPSRTLYDKVKKLGITTGTPRNRSSSSKRDPGPSSSSAAFPYGSLSGAAGAFLYPNQDNQLSQSQDFDSELENELKIHRPNPHAGLLDPVFLQKLAQEARSDEFRGDALHAMALAAAAHAQFNGMGSTSRSHDSPSASVLSKFMNRHSESIEMERERLDRERSRSNGDQTSLIKNEPVDDSDEDMEKAENLSLSKCESPPNITPPPQAQTPPSFEARGVIVPPMKYTSSPRSEPSSTTPPSISEQALSLEKSECKQQSFNNDAPIALTPTTTANYDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01250211; iTF_01249031; iTF_01249217;
- 90% Identity
- iTF_01250211; iTF_01249031; iTF_01249217;
- 80% Identity
- iTF_01250211;