Pvan006343.1
Basic Information
- Insect
- Polypedilum vanderplanki
- Gene Symbol
- bab2
- Assembly
- GCA_018290095.1
- Location
- CM031381.1:13510646-13544596[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.8e-11 4.4e-08 32.7 0.0 1 38 626 664 626 669 0.90 2 4 9.3e-12 1.1e-08 34.6 0.0 2 39 686 723 685 726 0.94 3 4 5.3e-16 6.2e-13 48.2 0.0 3 45 742 785 740 785 0.97 4 4 3.7e-19 4.4e-16 58.3 0.0 1 41 792 833 792 835 0.97
Sequence Information
- Coding Sequence
- ATGTCATTGAACACTGAATCACCTAAGAAAATCATGTATCCAACAATAGCTAGTACAAGCAGTGCAAAATCGCCTTCTAAGGCGCATCATCAAATGCCAAAAACTTCAAACTCATCGTTACCAAAGTCAACTCATGCCAATCAGATCTTACCAAATAATCATAGTCATGTTAATCCACATCAATATTATTCGCTTAGATGGAATAATTACCAAAAcaatttaacTGACATGTTTCATGAACTTCTCAACACTGAAAAATTTGttgatgTTACATTAGCATGTGAACACAACTATCTGAAATGTcataaaGTCGTACTATCAGCATGTTCatcatattttcaaaaaatcttgattGAGAATCCATGCAAACATCCTGTCATCATAATGCCACCCGAGATTGCATTTGCTGACTTACAATTCATAATTGAATTCGTCTATCGTGGTGAAATTGATGTGTCCGAAGCAGAATTACAGaGTCTTATAAGAACAGCagagcaattaaaaattaaaggcTTGTGTGAAATCAACGAACATACGGCCACCAACACGGAATCGGATACGGAAGTAATTTATCCACCACATAAGAAAATCCGAGCATCGcggcatcatcatcatcatcaatacgACAGCGGTCATCGGAATCACAATAATTCGCAAGATTTACAGAAAGATGCACAACCAATAGCCTCACAAGAGATAGAAAAACGTAAATCAAAATCGCCAATAAAGGAGATAGGAAAAAGTTTATCACCGGCAACTAGCAATCAAAATCAAAGTAAAAACATGGCGAGTCTTGAAATGGGAATGAACGGAAATGTTGTGATTCCACTAGCGTATATGGATTTTGCTCCCGAACCACCAGCACCCACTGCGACGCCTGTCATTACAACCGAAGTAAATTGTACACCGAGCCAAGATACAAAAGATCTGTCAATAGACGCAGCTCCGACTAACGGTACCGAGAACGCGagaatcataaaatttgaaacgCTGCGAAGTCTCGATCCAACCGATACGATTGTTGAATTTGATAATTCCATACAACATTCCATTTGTCGTCTAGATCATCATTCATCTACTGCCCATCATCCGACCGTATCGACCAACAGCCCAATCATTCACCACACGACACATCATGCTTCATCGACACCCGTGCAGATTATAACGACCTGTTCATCGCCAATCACTTCGATCAGTGATCTAAGTGGCTTAAAAACAACATCCATTATCACAACGGTGCCATCTATTATGAATCCACCGACTTCACAGGCCAATGACCATCATCagcatcaacaacagcaacaacagcaacaaattGAGCAATCTCATTCACCTgatcagcagcagcagcagcaacaacaacatcatcatcagcaacaACATCAGACTATTCCACATATTCATACGCTTCATCATCCACAAACAATAACAATTCATCAAGCACCACCGAGAATCATTCAACATCATCAGATCATTGAGACAATAAAGACTGAAGAGGTCGATCGAGACATAAAGCCATCGATTCATGAGTTAATGTCAGTTGGAGGTGGAAATGGAAATGCAATGGAGATCGATGGGCAGCAgacaaataataatgaaaatgtgcATGGCATTGTTGTGACACCGGAAATTGCCAATATGATGGCATCGACACCTACATCACAAATCGACCACCTTAATCATCTAAATCATCACTTACAACATTCAGATACAAGCGAAGACTCGAAAATGCATTCAGAACATAATGGCAGCAATGGCAGTATTGGTCATCATTTACAATACATCACACTAGGCAACAATATTGTAGCTACATCAACAGCTGGTAATACACCGACAAGTGACTCGAAAAGTAACAATAGTGGTCCCAAAACATGGACACCGAGTGATATGGAATCAGCACTTGAAGCTTTACGTTCACATAATATGAGTCTTACAAAAGCATCAGCTACATATGGCATTCCTTCAACAACACTTTGGCAGCGTGCACATCGATTAGGAATTGTTCTTGCGAAAATAGACACACCGAAGAAGGAGGGACCAACGAAAACATGGAATGAAGATTCACTAAACAATGCCCTCGATGCTTTACGTACGGGAACGATTTCAGCAAATAAAGCGAGCAAGGCATTTGGCATTCCCTCTTCTACGCTTTATAAGATTGCGCGACGTGAAGGAATTCGTTTAGCTGCTCCGTTCAACGCTGCGCCAACAAGCTGGTCAGCTGAAGATCTCGAAAAAGCTTTAGAAGCTATAAGAGCGGGTGCTGCTTCAGTACAGAAAGCTAGCAGTGAATTTGGAATTCCTACAGgtACACTTTATGGACGTTGCAAGCGTGAAGGAATTGAGCTATCGCGATCAAATCCCACACCTTGGTCCGAGGATGCAATGATGGAAGCGCTTGAAGCCGTACGtgtCGGTCAAATGTCCATAAATCAGGCAGCAATTCATTACAACTTACCATACTCATCGTTATATGGTCGATTTAAACGGGGCAAGTATGGTGATCCACCGAATGGCACTTCACATAATGACTCATCATCACATAATACAATCGAACACAGTCCCGAGAATTCGATAAGTAATTATACACATCATACGCTGATTGCAGAAACAAATGTGCCGCAACTGCAAGAACAAATCATCTATCAGCAACATTATTCGCCATCGACACAGCTCATCCATCAACAGCCACCACAAATCTATCATCATCAGCAGATTATCTATCATCAAAGTCCACCGCCGCATCCGCAGATTCTGCAAAttcatcaaatcaaaaaagagaCCAGTTGA
- Protein Sequence
- MSLNTESPKKIMYPTIASTSSAKSPSKAHHQMPKTSNSSLPKSTHANQILPNNHSHVNPHQYYSLRWNNYQNNLTDMFHELLNTEKFVDVTLACEHNYLKCHKVVLSACSSYFQKILIENPCKHPVIIMPPEIAFADLQFIIEFVYRGEIDVSEAELQSLIRTAEQLKIKGLCEINEHTATNTESDTEVIYPPHKKIRASRHHHHHQYDSGHRNHNNSQDLQKDAQPIASQEIEKRKSKSPIKEIGKSLSPATSNQNQSKNMASLEMGMNGNVVIPLAYMDFAPEPPAPTATPVITTEVNCTPSQDTKDLSIDAAPTNGTENARIIKFETLRSLDPTDTIVEFDNSIQHSICRLDHHSSTAHHPTVSTNSPIIHHTTHHASSTPVQIITTCSSPITSISDLSGLKTTSIITTVPSIMNPPTSQANDHHQHQQQQQQQQIEQSHSPDQQQQQQQQHHHQQQHQTIPHIHTLHHPQTITIHQAPPRIIQHHQIIETIKTEEVDRDIKPSIHELMSVGGGNGNAMEIDGQQTNNNENVHGIVVTPEIANMMASTPTSQIDHLNHLNHHLQHSDTSEDSKMHSEHNGSNGSIGHHLQYITLGNNIVATSTAGNTPTSDSKSNNSGPKTWTPSDMESALEALRSHNMSLTKASATYGIPSTTLWQRAHRLGIVLAKIDTPKKEGPTKTWNEDSLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTSWSAEDLEKALEAIRAGAASVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYGDPPNGTSHNDSSSHNTIEHSPENSISNYTHHTLIAETNVPQLQEQIIYQQHYSPSTQLIHQQPPQIYHHQQIIYHQSPPPHPQILQIHQIKKETS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01249025;
- 90% Identity
- iTF_01249025;
- 80% Identity
- iTF_01250209;