Ppem001560.1
Basic Information
- Insect
- Polypedilum pembai
- Gene Symbol
- -
- Assembly
- GCA_014622435.1
- Location
- JACWBX010003161.1:15341-22317[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.9e-11 3.1e-08 33.2 0.0 1 39 592 631 592 635 0.90 2 4 6.5e-12 1e-08 34.7 0.0 2 39 647 684 646 687 0.94 3 4 3.7e-16 5.8e-13 48.3 0.0 3 45 703 746 701 746 0.97 4 4 2.6e-19 4.1e-16 58.4 0.0 1 41 753 794 753 796 0.97
Sequence Information
- Coding Sequence
- ATGAGCGAAAGTCTAATAAGAACAGCAGAGCAATTAAAAATTAAAGGTTTGTGTGAAATCAACGAGCATACGGCCACCAACACGGAATCGGATACGGAAGTAATTTATCCACCACATAAGAAAATCCGAGCATCGCGTCATCATCATCATCACTACGATAGCGACCATCGGAATCACAATAGCTCGCAAGATCCAAAGAAAGATGCACAACAAATAGCTTCGCAAGAGACAGAAAAAAGCAAATCAAAATCGCCAATAAAGGAGATAGGAAAAAGTTCGTCGCCGGCCACGTTGAGCAATCAAAATCAAAGTAAAAATATGGCGAGTCTTGAAATGGGAATGAACGGAAATGTTGTGATTCCACTAGCATATATGGATTTTGCTCCCGAACCACCAGCACCCACTGCTACGCCCGTCATTACAACTGAAAGTCTAATAAGAACAGCAGAGCAATTAAAAATTAAAGGTTTGTGTGAAATCAACGAGCATACGGCCACCAACACGGAATCGGATACGGAAGTAATTTATCCACCACATAAGAAAATCCGAGCATCGCGTCATCATCATCATCACTACGATAGCGACCATCGGAATCACAATAGCTCGCAAGATCCAAAGAAAGATGCACAACAAATAGCTTCGCAAGAGACAGAAAAAAGCAAATCAAAATCGCCAATAAAGGAGATAGGAAAAAGTTCGTCGCCGGCCACGTTGAGCAATCAAAATCAAAGTAAAAATATGGCGAGTCTTGAAATGGGAATGAACGGAAATGTTGTGATTCCACTAGCATATATGGATTTTGCTCCCGAACCACCAGCACCCACTGCTACGCCCGTCATTACAACTGAAGTAAACTGCACACCGAGCCAAGATACAAAAGATCTGTCAATAGACGCAGCGCCGACTAACGGTACTGAAAACGCGAGAATCATAAAGTTCGAAACGCTACGAAGTCTCGATCCAACAGATACGATTGTTGAATTTGATAATTCCATACAACATTCCATTTGTCGTCTAGATCATCACTCATCTTCTGCCCATCATCCAACCGTATCGACTAGCAACAGTCCAATCATTCACCACACAACACATCACGCTTCTTCTACGCCCGTGCAGATCATAACGACCTGTTCATCGCCAATCACGCCAATGACCATCATCATCATCATCAACAAGCAGCAGCAGCAACAGCAACAACAAATTGAGCAATCTCATTCGCCTGATCAACATTCTCATCATCAACAGCAGCAACAACAACAACAACAGCAGCAACATCAACATCAGAATATTCCACATATTCATACGATTCATCATCCACAAACAATCACAATTCATCAGGCTCCGCCAAGAATTATTCAACATCATCAGATCATTGAGACAATAAAGACTGAAGAGGTTGATAGAGACATTAAGCCCTCAATTCATGAGTTGATGTCAGTTGGCGGTGGTAATGGAAATGGCATGGAGGTCGATGGGCAGACTAATAATAATGATAATGTGCATGGCATTGTTGTGACACCGGAAATTGCCAATATGATGGCATCAACACCTACTTCACAAATCGACCATCTCAATCATCTAAATCACCATAATTTGCAACATTCAGATACAAGCGAGGATTCGAAAATGCATTCGGAACATAATGGCAGCAATGGCAGTCTCGGTCATCATTTACAATACATCACACTCGGAAACAATATTGTGACAACATCGACAGCTGGCAATACACCGACTAGTGACTCGAAGAGCAATAATAGTGGACCCAAGACATGGACACCAAGCGATATGGAGTCAGCACTTGAAGCATTGCGTTCACACAATATGAGTCTCACAAAAGCATCTGCCACATATGGCATTCCATCAACGACTCTCTGGCAGCGTGCACATCGGTTGGGAATTGACACACCGAAAAAGGAGGGACCGACGAAAACATGGAATGAAGATTCGCTGAATAATGCTCTTGATGCTTTACGTACGGGTACAATTTCGGCAAATAAGGCGAGCAAGGCATTTGGAATTCCTTCTTCTACGCTTTATAAGATTGCTCGACGTGAAGGAATTCGTTTGGCCGCTCCATTTAACGCTGCACCGACAAGTTGGTCAGCTGAAGATCTCGAGAAAGCTCTAGAAGCTATACGAGCGGGTGCTGCTTCGGTTCAAAAAGCAAGCAGTGAATTTGGAATTCCTACAGGTACACTTTACGGACGTTGCAAACGTGAAGGAATAGAATTATCGCGATCTAATCCCACGCCTTGGTCCGAGGATGCAATGATGGAAGCGCTCGAAGCCGTGCGTGTCGGTCAAATGTCCATAAATCAGGCAGCAATTCATTACAACTTACCATACTCATCACTATATGGCCGATTTAAGCGGGGCAAGTATGGTGATCCACCAAATGGCACTTCACACAATGACTCATCATCACACAATACGATTGAACACAGTCCCGAGAACTCGATAAGTAATTATACACATCATACGCTGATTGCAGAGACAAATGTGCCGCAACTGCAAGAGCAAATCATCTATCAGCAACATTACTCGCCATCGACGCAGCTCATCCATCAACAGCCGCCACAAATCTATCATCATCAGCAGATTATCTATCATCAGAGCCCACCACATCCACAGATTCTGCAAATTCATCAAATCAAAAAAGAGACCAGTTGA
- Protein Sequence
- MSESLIRTAEQLKIKGLCEINEHTATNTESDTEVIYPPHKKIRASRHHHHHYDSDHRNHNSSQDPKKDAQQIASQETEKSKSKSPIKEIGKSSSPATLSNQNQSKNMASLEMGMNGNVVIPLAYMDFAPEPPAPTATPVITTESLIRTAEQLKIKGLCEINEHTATNTESDTEVIYPPHKKIRASRHHHHHYDSDHRNHNSSQDPKKDAQQIASQETEKSKSKSPIKEIGKSSSPATLSNQNQSKNMASLEMGMNGNVVIPLAYMDFAPEPPAPTATPVITTEVNCTPSQDTKDLSIDAAPTNGTENARIIKFETLRSLDPTDTIVEFDNSIQHSICRLDHHSSSAHHPTVSTSNSPIIHHTTHHASSTPVQIITTCSSPITPMTIIIIINKQQQQQQQQIEQSHSPDQHSHHQQQQQQQQQQQHQHQNIPHIHTIHHPQTITIHQAPPRIIQHHQIIETIKTEEVDRDIKPSIHELMSVGGGNGNGMEVDGQTNNNDNVHGIVVTPEIANMMASTPTSQIDHLNHLNHHNLQHSDTSEDSKMHSEHNGSNGSLGHHLQYITLGNNIVTTSTAGNTPTSDSKSNNSGPKTWTPSDMESALEALRSHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKTWNEDSLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTSWSAEDLEKALEAIRAGAASVQKASSEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYGDPPNGTSHNDSSSHNTIEHSPENSISNYTHHTLIAETNVPQLQEQIIYQQHYSPSTQLIHQQPPQIYHHQQIIYHQSPPHPQILQIHQIKKETS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01250005; iTF_01250209;
- 90% Identity
- iTF_01250005; iTF_01250209;
- 80% Identity
- -