Basic Information

Insect: Polypedilum pembai
Gene Symbol: su(Hw)
Assembly: GCA_014622435.1
Location: JACWBX010001499.1:34115-36234[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.4e-06 6.6e-05 23.1 1.7 3 20 156 173 154 175 0.94

2 10 9.3e-07 4.3e-05 23.7 0.2 1 23 188 210 188 210 0.97

3 10 5e-07 2.3e-05 24.5 0.3 1 23 220 242 220 242 0.99

4 10 1.2e-05 0.00054 20.2 0.3 2 23 249 272 248 272 0.93

5 10 5.2e-06 0.00024 21.3 0.7 1 23 278 300 278 300 0.99

6 10 2.2e-05 0.001 19.3 3.3 1 23 306 328 306 328 0.95

7 10 8.7e-05 0.004 17.5 1.0 1 23 334 357 334 357 0.95

8 10 3.1e-05 0.0015 18.9 1.4 2 23 364 385 364 385 0.97

9 10 1.1e-05 0.0005 20.3 0.5 1 23 391 413 391 413 0.98

10 10 0.027 1.3 9.6 3.6 2 23 420 442 420 442 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.4e-06	6.6e-05	23.1	1.7	3	20	156	173	154	175	0.94
2	10	9.3e-07	4.3e-05	23.7	0.2	1	23	188	210	188	210	0.97
3	10	5e-07	2.3e-05	24.5	0.3	1	23	220	242	220	242	0.99
4	10	1.2e-05	0.00054	20.2	0.3	2	23	249	272	248	272	0.93
5	10	5.2e-06	0.00024	21.3	0.7	1	23	278	300	278	300	0.99
6	10	2.2e-05	0.001	19.3	3.3	1	23	306	328	306	328	0.95
7	10	8.7e-05	0.004	17.5	1.0	1	23	334	357	334	357	0.95
8	10	3.1e-05	0.0015	18.9	1.4	2	23	364	385	364	385	0.97
9	10	1.1e-05	0.0005	20.3	0.5	1	23	391	413	391	413	0.98
10	10	0.027	1.3	9.6	3.6	2	23	420	442	420	442	0.97

Sequence Information

Coding Sequence: ATGGGTCGTACAAAAGGAAGCGTAAATAGTAAAAACAAATCAAAGGCTTCAACGCAAACAAAGCTTAATTTTCCAGTAGTAAAAAAGGATGAAGAGAAGCCGGTTGCAGCAATTCCGGTTTTAGAAGCGCCTTTGATGATATTTGTATGCAGGCGTTGTCACAATAATTTTGACACTACAGAATCATATCAAATGCACAATTGTCCAGCTCAATTATTTGCAATTGTTGAAACTGATGAAATTCAAGAAACTATTGACACAAATACTTCTAAAGTAAAATCACCTGAGAAAACAAAATCACCACAAGAGAAAAAGAAAGAAAAAGCTCCCAAAAAATCAAAAATTTCCGAAAGTAAACAGGACGAAAATGATAATGAGGAAGTTGTAAAAGAAAAGAAACCACGAAAACCTTATAAGAAACGCGAAAAGAAAAAAGATGATGATGAACCAAAAGTTCCAATTGCATGTGAAAAATGTGGCAAGTCATTTACACGAAAATATCATCTTGAAAGACATTTAACACATACACAGTGCAATCCAGGAACTTTCAAGAAAGAAGAATTCAATTGTGAAGTTTGCGGCAAAATATTTTCTCGCATTGACAATCTTCGAATGCATTTACGAGCTCATTTGGGTCAAAAATCAAGATCCAGAGACTTTCAATGTCCATATTGTGAAAAAGCTTTTTATGGATCGTCATTGCTTAATATTCATATACGTTCGCATACAAGAGAAAAGCCATATTTATGTGAATTTGAGAATTGCGGAAAAGGATTTCCATCTAGCGGAGCCCTAACAAAACATCGTAGAACACATACTGGCGAACGCCCATATGAATGTAAAATATGCGGTAATCGATTTGCAGCCAAAGAAACGTTAAATCGTCATACTCGAACACATACTGGACGACGAGATCATGTATGTCGAATTTGTGGCAAGAGTTTCATCCAGAACACACAATTACGCGCTCATCTTTTTCACCATACTGGCGAACATGCTTATACATGCGATATTTGCGGCAAACAATTCAATCGAAAGACTCGAATGCGCGAACATCTCGAGTATATTCATTTAGAAAAAAAAATGCCAACATGTAACATGTGTTCGAAAACTTTTATGCGTCGTGAAGATTTATCACGTCATATTGAGTCACATATTGGTGAAAGAAACCATACTTGTGCAATATGCGATAAGAAATTCGTTACAAAAGCTGCTGCTAGAATTCACATGAGAATTCATCAAGTTGAAGATCCAGCACGATGTAATTATTGTAACAAGGACTTTTTGCGTATGGATTGTTTAGTTCGTCATGTTCGCTCAAAACATCGTGATATGCTACAACAAATAATTGTCGAAGCTGAAACAAATAGAATCATTTCGGCACAACAAAGTAAAATTTCAGATGCTGATGAACTTGAAATTATCGTTTACAACGAAGAAGACTCTCAGGATGCAGAAGCAAGAGGGGAAGTTTATGAGGTTGTCAATGTTGAAGAGACAGTTGCTGTCAAACCAAAGGTAACAACGAAGAAAGTTGTTGAATCTATATCAGAAGATGAAGACGATTGTGCGCCAATATTTTTGGATGATGATCTTCTTATGAAGAGAATTCAAGAACTTTTGCAAATCGTTATTGAAGAAAGTCTTTTGAAAGAACTTGGATTTGGTAAAAAACCAATTGATGAAGTTTTATGCTCAGTGCTTGAGCAGTGCAGTCATAAACCATTGAGAAAATCTGATGGAGTTTTGGACGATTCAACAAGAATGCGTGAAAATACTAAGCAATTATTTTCAATGGTACTTGATGAAGATCATATCAAAAGTTTGCTCAATAATTACACAGTTGATGAAGTCATCACAATCGTATTGAAAATGGCAAAATAA
Protein Sequence: MGRTKGSVNSKNKSKASTQTKLNFPVVKKDEEKPVAAIPVLEAPLMIFVCRRCHNNFDTTESYQMHNCPAQLFAIVETDEIQETIDTNTSKVKSPEKTKSPQEKKKEKAPKKSKISESKQDENDNEEVVKEKKPRKPYKKREKKKDDDEPKVPIACEKCGKSFTRKYHLERHLTHTQCNPGTFKKEEFNCEVCGKIFSRIDNLRMHLRAHLGQKSRSRDFQCPYCEKAFYGSSLLNIHIRSHTREKPYLCEFENCGKGFPSSGALTKHRRTHTGERPYECKICGNRFAAKETLNRHTRTHTGRRDHVCRICGKSFIQNTQLRAHLFHHTGEHAYTCDICGKQFNRKTRMREHLEYIHLEKKMPTCNMCSKTFMRREDLSRHIESHIGERNHTCAICDKKFVTKAAARIHMRIHQVEDPARCNYCNKDFLRMDCLVRHVRSKHRDMLQQIIVEAETNRIISAQQSKISDADELEIIVYNEEDSQDAEARGEVYEVVNVEETVAVKPKVTTKKVVESISEDEDDCAPIFLDDDLLMKRIQELLQIVIEESLLKELGFGKKPIDEVLCSVLEQCSHKPLRKSDGVLDDSTRMRENTKQLFSMVLDEDHIKSLLNNYTVDEVITIVLKMAK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01250363;
90% Identity: iTF_01250363;
80% Identity: iTF_01249323;