Piph015313.1
Basic Information
- Insect
- Polyommatus iphigenia
- Gene Symbol
- -
- Assembly
- GCA_963422495.1
- Location
- OY730182.1:39619655-39637326[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.11 4.2e+03 -1.0 0.0 7 34 174 205 168 214 0.69 2 6 0.00031 11 7.2 0.2 26 51 250 275 238 278 0.88 3 6 0.0085 3.1e+02 2.6 0.0 21 40 285 304 279 310 0.76 4 6 5e-06 0.19 12.9 0.1 23 45 313 335 307 340 0.90 5 6 0.082 3e+03 -0.6 0.0 22 45 340 363 336 366 0.83 6 6 0.0022 83 4.4 0.0 14 45 388 419 382 424 0.84
Sequence Information
- Coding Sequence
- ATGATTGATGAAGAACATCGAATAACTGAAAACGAATCTTACTTAGACGACCATTTATATATTAGGAATCCAAGCCAATTGACCGAGTATGCTGCCGAGATACACATGGAGGACAATCTGCCACAACAACTGTGCGATATCTGTGCAAGAGATCTTGAGTTCTGTGTAGAATTCAGAGAGAAATGTATATCTTCAAATTGTATATTATCAAATTCCATATTGGCGAGTGCTCTAACTTCGATTGAGGGTTCAAAAATTATCTCCAAAATTAAGCAGGAAGATAATTTAGAATATGATGTCGAGataaaatattCTGAAACTAATAAACAAGAAGATACTACAACACTAAAGAGTGAACACAATGATTTGGAGAACAATGAGACACTACAATCTGAAGACAATTTTATTTACGAATATATACCAGATGTTAAAACACCAAATATTGATAATAACACTTTACAAACTCCTGTATCAAGCCATGAAACAGCTAGAGAAATCGCAACTAAAAGTGCTCGAAAGTTGGCTCCGAGGGCAGTAAAGAAAGAAATTAACATGAGTGATAAGAAACAGCCTGCAGTTGCAAAATTTTATTGTGGGCTCTGTGTAGAGATGATAGAAAAGGACAAGCTATGTGACCACGTCAAAAGCCACGAGAGCAACGATCACTGTGGCATATGCTCCTCCCAGCTCAAAGACTGGGAGACGATGCTGTATCACAGAATATCTCATCTGCAAAAACCCAACATTATGTGCCACATTTGtttgaaaattttcaaaaattcagTCTCCTTAGAATATCATTACAATatgaaacatttggataaagttAAGCTGCATAAACTACGGATGCATACTGCAGAAAAGGCGTCATGTAAGCTGTGCAAAGCTGTGTTCAAAAACGAGAGCCGCCTCGAACTACACAAATGCAAATTCAGTGATCCAACTATATGTCCCGTGTGCGGCATTATCATCGAAGTGCCGAAAAAgATGAAGCGGCATCTAGAATCGCACAGTGACGAGCGTAAATACAAGTGTGACCGCTGCGACGCAACATACAAGGACCACGGCGCGCTGCGGGTGCACTTGAACAAGCACGACGGTATCCGCGCACACAAATGCGAGTTCTGCTCGAGAACCTTCTGGTCTCAAACTACACTCAAAAAACATCGTAGGGTGCATACTGGTGAGAAGCCATATGTGTGCAAGGTGTGTAACAAAGGTTTTTCTGCCAACCACAACCTTAAAGTTCACATGCGAGTGCATGGAGTATTCAACCTTATAAAGAAAAAAGGTGCTGAAGATGATtctaattaa
- Protein Sequence
- MIDEEHRITENESYLDDHLYIRNPSQLTEYAAEIHMEDNLPQQLCDICARDLEFCVEFREKCISSNCILSNSILASALTSIEGSKIISKIKQEDNLEYDVEIKYSETNKQEDTTTLKSEHNDLENNETLQSEDNFIYEYIPDVKTPNIDNNTLQTPVSSHETAREIATKSARKLAPRAVKKEINMSDKKQPAVAKFYCGLCVEMIEKDKLCDHVKSHESNDHCGICSSQLKDWETMLYHRISHLQKPNIMCHICLKIFKNSVSLEYHYNMKHLDKVKLHKLRMHTAEKASCKLCKAVFKNESRLELHKCKFSDPTICPVCGIIIEVPKKMKRHLESHSDERKYKCDRCDATYKDHGALRVHLNKHDGIRAHKCEFCSRTFWSQTTLKKHRRVHTGEKPYVCKVCNKGFSANHNLKVHMRVHGVFNLIKKKGAEDDSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01248614;
- 90% Identity
- iTF_01248614;
- 80% Identity
- iTF_01248614;