Basic Information

Insect: Polyommatus iphigenia
Gene Symbol: ush
Assembly: GCA_963422495.1
Location: OY730189.1:32318410-32329958[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0037 0.35 12.4 0.3 1 20 128 147 128 149 0.95

2 9 3.6e-05 0.0034 18.8 0.5 1 23 186 208 186 208 0.98

3 9 0.017 1.6 10.4 1.0 2 19 238 255 238 257 0.94

4 9 0.31 30 6.3 1.3 2 21 495 514 494 515 0.90

5 9 0.014 1.3 10.6 0.3 3 20 544 561 542 563 0.90

6 9 5 4.8e+02 2.6 0.0 2 23 590 611 589 611 0.93

7 9 0.0046 0.43 12.1 1.2 1 23 617 639 617 639 0.99

8 9 0.17 17 7.1 0.7 1 23 676 699 676 699 0.96

9 9 0.21 20 6.9 0.8 2 20 742 760 742 762 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0037	0.35	12.4	0.3	1	20	128	147	128	149	0.95
2	9	3.6e-05	0.0034	18.8	0.5	1	23	186	208	186	208	0.98
3	9	0.017	1.6	10.4	1.0	2	19	238	255	238	257	0.94
4	9	0.31	30	6.3	1.3	2	21	495	514	494	515	0.90
5	9	0.014	1.3	10.6	0.3	3	20	544	561	542	563	0.90
6	9	5	4.8e+02	2.6	0.0	2	23	590	611	589	611	0.93
7	9	0.0046	0.43	12.1	1.2	1	23	617	639	617	639	0.99
8	9	0.17	17	7.1	0.7	1	23	676	699	676	699	0.96
9	9	0.21	20	6.9	0.8	2	20	742	760	742	762	0.93

Sequence Information

Coding Sequence: ATGCAGCATACAAATAGTGGTGGCTGGGTCGATAGCGGAATCGAACCCGCGATATGTGAAGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCGGGAGAACCTCGCACGCCGAGCTCGGGCGGAGAGCGCGCGGCGTCCAGCGGGGACGCGTCACCGACCTCGGAGGGCTCGGCGACCAACTCGCCCCCGCGGCTGCGGCTCAACGCGAGCCTGGCGACCGACCCGGCCCTCGCGCCGCGCGCCACGTCGCTGTCGTCGCTGAAGCACGAGCCCCCCTCGCCGtcgccgccgcccccgccggCGCAGCCGATCAACTACATGCCTCTGACGGCGGCGAATTTCCCGTCGCTATTTCCGGCGGCGACGGCGCCCACCGGATACACGTGTAAGCCGTGCGGAATCCGGTACTCGTCGCTGAGTACCCTTCAAGCTCACCAGGAGCACTACTGCTCCAAAAGAAGAACGAAGCCGGACGGCACGGAGGCCCCGGTCGACGCCGCCGCCGACGAGTCGAGCGGGGACTCGAAGACGCCCAAGCCGCTCGGAAAACAATACGCCTGTCCCTACTGCTCCTATAGCGCTGACAAGAAGGTCAGCCTCAACAGGCACATGCGCATGCACTCGTCGTCCCCCGTGAGCACCGGCACGCCGGGGCCGACCCCCACGTCCAACGGCGACTCCGCCGACGGGCCCCCGGCGCAGGACCGGTACTGCACAGATTGTGATATACACTTCAGCTCGCTGCGAACTTTTCGCGCTCACAAGGACTTCTACTGCAACACGAGGCAGGTGGTGAAGCAGGCCCTGGCGGCCGCACGCGCGAGCTCGGCGACGTCCGGCTCCGCGCCGCCCTCCCCGGGGGCCACTCCTCCCGCTCAAAATCAGCTGGCCCTAGCTCTTCCCACTAATCCGATTTTAATAGTTCCGTACTCGATTCTCCGGAGCGCCAGCACGCTCCCCGGCACGACGCTTCCGGACCCGGAGACGCCCTGCTTCCTCCTCCCGAACGGGACGTTCCAGCCCATAAGCAGGGCGCTGCCCAACATCAACGCGGAGAACAAGGAGCCCGAGGTCCTGAAATCTGCGAATCGATGCAGGGAGCCCCCTCGCGACGGATCCACCCCTCTGGACCTGAGCGTCCGCCGGACGCCCGAGTCGGGGACGCCGAACGACGAGCACGAAAAGGAAAACAGGCTCCGGTCCGCCACGCCCGAGCAGATCGTGTGCGCGCCGTCGCTGCCCGGCTCCCCGGGCACCCCGTCGCCGTCGCGGCGCTCCTCGTCGCCCAGCGGGGAGTCGTCGCCGAAGAGACGTCGACGAAACTCGAGGGACCCCACGCCGAAACCCCCGAGCGGGTCTCCCCACGAGGAGAAGTACACCCCCGCGGTCACCCCGACCCTACAGGGGGCGCTGGCGCTCCGGCTGGCCGCGGAGCTGCCGGCGGCGGCCCCGCAGGTGCTGGTCAAGCAGGGCGTGTCCAAGTGCATAGAGTGCAACATAGTGTTCTGCAAGTACGAGAACTACCGCGTCCACAAGAGAAACTACTGCTCGGCCGGGCGAGGCGAGGAGCGGGCGAGCCCCGCGCCGCCGGAGCCCGGGCCGCCGCCGCAGTACCGACAGCTGATCTGCCTGGCGTGCGGCATCCACTTCAGCTCGTTCGACAACCTGACGACGCACCAGTCGTACTACTGCACGAAGAGGGAGACGCGGTCGCCGCGCGCGGCGGAGACGGCGCGGCCGGCGGCGGCGGGTGAGGGCGGGTGGAAGTGCCCGTGCTGCGAGGTGGTGTCGCccacggcggcggcggcgcagcGCCACATGGAGGCGCACGCCGGCGTCAAGGCGTTCCGCTGCACGATCTGCCAGTACCGCGGCAACACGCTGCGCGGCATGCGCACGCACATCCGCATGCACTTCCGCGAGAAGCCCGCCGACCTGCAGGAGGAGAGCTACATCTCGTGCGTGGTGGAGGATTCCGGGGCGGAGGGCgaggcggcgggggcggcggggggCGAGCGCGTGCACCGCTGCGGCACGTGCGCGTACACGTCTACGTACCGCGGCAACGTGGTGCGGCACGCGCGCCTCGTGCACGCCGCCGACGACGACGACCGCGCCTCGCCCAGCCCCgcccccgcgcccgcgccgccccccGCCTCCgcccccgccgcgccgcccgacATCAAGCGGGAGCCGGACGCGGACGAGGACGCCCCCAACTACTGCAAGTCCTGCAACATCTCCTTCAAGTACGTCAAGTCGTATAAAGCCCACAAGGACTACTACTGCAAGGCCGCGCGGCAGGACGCCGCGGGGAACAACAACGTGGCGCCGCGCGACGCCGCGCCCGTCGTCTGA
Protein Sequence: MQHTNSGGWVDSGIEPAICEDEEWGNESEAMPGEPRTPSSGGERAASSGDASPTSEGSATNSPPRLRLNASLATDPALAPRATSLSSLKHEPPSPSPPPPPAQPINYMPLTAANFPSLFPAATAPTGYTCKPCGIRYSSLSTLQAHQEHYCSKRRTKPDGTEAPVDAAADESSGDSKTPKPLGKQYACPYCSYSADKKVSLNRHMRMHSSSPVSTGTPGPTPTSNGDSADGPPAQDRYCTDCDIHFSSLRTFRAHKDFYCNTRQVVKQALAAARASSATSGSAPPSPGATPPAQNQLALALPTNPILIVPYSILRSASTLPGTTLPDPETPCFLLPNGTFQPISRALPNINAENKEPEVLKSANRCREPPRDGSTPLDLSVRRTPESGTPNDEHEKENRLRSATPEQIVCAPSLPGSPGTPSPSRRSSSPSGESSPKRRRRNSRDPTPKPPSGSPHEEKYTPAVTPTLQGALALRLAAELPAAAPQVLVKQGVSKCIECNIVFCKYENYRVHKRNYCSAGRGEERASPAPPEPGPPPQYRQLICLACGIHFSSFDNLTTHQSYYCTKRETRSPRAAETARPAAAGEGGWKCPCCEVVSPTAAAAQRHMEAHAGVKAFRCTICQYRGNTLRGMRTHIRMHFREKPADLQEESYISCVVEDSGAEGEAAGAAGGERVHRCGTCAYTSTYRGNVVRHARLVHAADDDDRASPSPAPAPAPPPASAPAAPPDIKREPDADEDAPNYCKSCNISFKYVKSYKAHKDYYCKAARQDAAGNNNVAPRDAAPVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00935260;
90% Identity: iTF_01217910;
80% Identity: -