Piph007567.1
Basic Information
- Insect
- Polyommatus iphigenia
- Gene Symbol
- L
- Assembly
- GCA_963422495.1
- Location
- OY730179.1:39625553-39647180[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.7e-06 0.00016 22.9 1.7 1 23 83 105 83 105 0.99 2 17 0.74 70 5.2 5.8 1 23 111 133 111 133 0.97 3 17 9.9e-06 0.00094 20.5 4.1 1 23 139 161 139 161 0.99 4 17 3.1e-05 0.0029 19.0 0.1 1 23 167 189 167 189 0.98 5 17 4.7e-05 0.0044 18.4 0.1 2 23 205 227 204 227 0.95 6 17 7 6.7e+02 2.1 0.1 9 23 258 273 254 273 0.93 7 17 0.35 34 6.2 0.0 3 23 328 348 327 348 0.97 8 17 0.2 19 7.0 0.0 3 23 363 383 362 383 0.91 9 17 7.1e-05 0.0067 17.8 1.8 1 23 391 414 391 414 0.94 10 17 0.013 1.2 10.7 0.2 1 23 419 442 419 442 0.94 11 17 5.3e-05 0.005 18.2 0.3 1 23 502 526 502 527 0.96 12 17 0.00023 0.022 16.2 0.1 2 23 581 602 580 602 0.96 13 17 0.19 18 7.0 0.0 1 23 610 632 610 632 0.97 14 17 9.3 8.8e+02 1.7 0.4 2 23 640 661 639 662 0.89 15 17 1 97 4.7 0.3 1 23 736 758 736 758 0.94 16 17 0.0063 0.6 11.7 0.1 1 20 766 785 766 788 0.95 17 17 0.047 4.4 8.9 0.6 1 23 795 817 795 817 0.94
Sequence Information
- Coding Sequence
- ATGATCATGCTATTCAAGGGAAACAGCAGTAGGCTAGAGCACCTGATCGAGAAGATACAGGCGAACAAGGAGAACCACGATGTTACAGAAGATATCAAAGAAGCGCTGGGCAGCGTGGGCAGCACTGCCGGGAGCTCCTGGCCATCATCGACCCCCGAGCCGTCACCCTCGCCCGCTTCAACGCCGACGTCCGCGGACGCCGACGCCGACCCGCCCTTCACGCTCGGCGCGACCGAGCACACGCCCTACCAGTGCCAGTTCTGCGATAAGGCCTTCCCGAGACTATCGTACCTGAAGAAGCATGAACAGACGCATTCAGATCAGATGCCATTCCGCTGCGAGTTCTGCTCCCGTCTGTTCAAGCACAAGCGGTCCCgggacagacacgtcaaacttcaCACCGGGGACAGGAAATATCGCTGCGCGCACTGCGAATCTGCCTTCTCCAGGAGCGATCACCTGAAGATCCATATGAAGACGCACGACAACCAGAAGCCGTTTCAGTGCACGGTGTGCAACCGCGGGTATAATACGGCGGCCGCGCTGACGTCACACATGCAGGGACACAAGCGGGACAGGGAGGGCCGGGAGGTGGACAGGCGACGAGCCCTCCGCTGTCTGAGGTGCGGGGAGGGGTTCCGGAGATCAGATATGCTTCAGGCTCACATGGCTAGTGCTCATGGAGTAGAAACCACATCAATGACTCCCCCTCGTAGAGTCGCGTCGCAGCCACCACCCACTTTACTCGCGTGCATCTACTGTACAAGGGATACTTTCACGAGTATGGAACAGTTGCAGTTACACGTGCGCGCAGCTCACTCTGCTATCTTAAATGGAGAGGCACCAGCTCAATTTACAGTAGACCAGCCCACCCCTACGGATTTAAGCAGAAGAGGAACCGACGAACCGATCGCTAAGCGCCCACGATCGAGCACAGGGTCTGCTACGCCGAAAACAAATCTCTCACCAAGTACGCTACTCTGCAACCAATGCGATGCTGCCTTACCAGATTTTGAGGCTTTTCGAGCTCATTTGAAGGGACATCTGGAGGAAGGAGGCGAACTAAATCGCACCAGCCCGAACCCTTGCGTTCATTGCGGAGCGACTTTTGCCGACGCAGCCGCTTCCGAGAGACACTTAGCCGCTCATTACTTAGCCGTATCCTGTGAATACAATTGTCATAGCTGCGCTCGAAGCTTTACCACTTCCGACGATCTTCAAAAACATTTACTAGAGATGCACACTCACCACATGTACCGGTGTTCTCTTTGCAAAGAGATATTTGATTCGAAAGTTTCTATACAGGCTCACTTCGCAATGGCGCACAGTGGTGAAAACAAAGTATGGGTATGTCGATCGTGTGGTAGTGCTGGTGGGGCTTTACGCACGGAGGCGGAAGGCGCTGCTCACGTGCGGGCGAGGCACGCGGCGTCCAGATGCGCCTGTGGTGCGATACTACCTGGGGCAAGGGCGCTAAGGGCACACACTGCAGCCCACCACGCCTATCGGTGCCCTGTGCCCAACTGCACTGAATCCTTCGCTGTCCAGTATTTACTTGAAAGGCACATGCAGGCTCATCACGCTGTTGGGCAAACGGGTGTAAACGGTGACCTATCTAGAGTGAAACGGGGTGAAAATAACAATGGACTGGAGGATGACAATTGTTCGCCCTGTGTGCCCGAAGGCAACGGTCCAGTGTCCATAGACGATAGGCGACGTAAGAACGGCGCAGTTGCTCTCCAGTGCGCCTACTGCGGGGAGCGCACGCGCAGCCGCGCCGAGCTCGAAGCCCACACCCGCGCGCATTCCGGTACAGCCGCCACCCGCCACAAGTGCCTCATATGTGACGAAATACTTCCCTCCGCTGCGGTGCTCGCTGAGCATAAATTGACGCATTGTAAGGTAATAGCTGGGGATGTATGTGCACGATGTCGCTCTCGACTACCTTCGGAGGAAGCCTTCCTGAGTCACATGGCCCGCCATCACCCCACTTTGCCAGCGCCCTGCGTGATATGCCGCCAGACGTTAGCATCGGAGGGCGAGGCACGCCTACACGCAAGATTCCACCTGCGTCCGAACGAGGACGAGCAGCGCTGTGCGATATGTCTCCGAGCTCTGACCGACAGCGAAGCCGGGGACGGAGCTCGAGCCTGTTCGTCGTGCTACGCTCGCCACGCTACCCCCCGCCCGCCTCCCCCCGCAGACCACGACTGTCGACTGTGCCGCCGAGCCCTGGGCTCCCCGACGCGCCTGCAAGCTCATCTCATCGAGCACACCTTCGCCGGCATCGGGGCGTTCACCTGCTACTTGTGCTCGGCGATGTTCACCAGCGCCGCCGGCCTGCAGCGCCATCTCCCGGAGCACGCGGCCGCCCCGCGACCCTACGACTGTAATCGATGCGGGCTGAAGTTTTTCTTCCGAGCCGAACTGGACAACCACGCGTTCGTGCATTTGGAGGAGGCCGAAATCGCTCAGAGGGCGTTCTACGAGGCTTACGCTCGGGGTGCCGTTTCTGCGTGGGCGGCTCTCCAACCCCCGGAGCCTCCGCCGCAACCCCCGGTAGCGTCGCCCTCGCAACCGGAGGTTCCGGTGAAGCAGGAACCGGAAATAAAAGAGGAGCGCCAGGACGAGTACATAGAAGTGTCCTCGCCGCCCCCGCCGCAGGAGACCCCGCCGAGCCCGAAGCCCGTCGTCAAACAGGAGAAGCCCGATGAGGAATGA
- Protein Sequence
- MIMLFKGNSSRLEHLIEKIQANKENHDVTEDIKEALGSVGSTAGSSWPSSTPEPSPSPASTPTSADADADPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREVDRRRALRCLRCGEGFRRSDMLQAHMASAHGVETTSMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSAILNGEAPAQFTVDQPTPTDLSRRGTDEPIAKRPRSSTGSATPKTNLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGGELNRTSPNPCVHCGATFADAAASERHLAAHYLAVSCEYNCHSCARSFTTSDDLQKHLLEMHTHHMYRCSLCKEIFDSKVSIQAHFAMAHSGENKVWVCRSCGSAGGALRTEAEGAAHVRARHAASRCACGAILPGARALRAHTAAHHAYRCPVPNCTESFAVQYLLERHMQAHHAVGQTGVNGDLSRVKRGENNNGLEDDNCSPCVPEGNGPVSIDDRRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGTAATRHKCLICDEILPSAAVLAEHKLTHCKVIAGDVCARCRSRLPSEEAFLSHMARHHPTLPAPCVICRQTLASEGEARLHARFHLRPNEDEQRCAICLRALTDSEAGDGARACSSCYARHATPRPPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAMFTSAAGLQRHLPEHAAAPRPYDCNRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAVSAWAALQPPEPPPQPPVASPSQPEVPVKQEPEIKEERQDEYIEVSSPPPPQETPPSPKPVVKQEKPDEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_01178881;
- 80% Identity
- -