Piph028943.1
Basic Information
- Insect
- Polyommatus iphigenia
- Gene Symbol
- -
- Assembly
- GCA_963422495.1
- Location
- OY730188.1:25099206-25101593[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.4e-05 0.0022 19.3 4.0 1 23 14 37 14 37 0.95 2 19 0.0043 0.41 12.2 1.6 2 23 43 65 42 65 0.94 3 19 0.00015 0.014 16.8 0.1 2 23 74 96 74 96 0.97 4 19 0.004 0.38 12.3 3.5 2 23 105 127 104 127 0.93 5 19 7e-05 0.0067 17.8 0.4 2 23 135 157 134 157 0.96 6 19 1.2e-06 0.00012 23.4 2.4 2 23 165 187 164 187 0.96 7 19 6.5e-05 0.0062 17.9 3.4 1 23 193 216 193 216 0.96 8 19 0.039 3.7 9.2 0.1 3 23 264 285 263 285 0.95 9 19 0.029 2.8 9.6 0.7 1 23 315 338 315 338 0.92 10 19 0.36 34 6.1 0.3 2 20 346 364 345 366 0.89 11 19 0.025 2.3 9.8 0.6 3 23 376 397 375 397 0.95 12 19 0.08 7.6 8.2 2.4 1 23 420 443 420 443 0.96 13 19 0.00011 0.011 17.2 1.1 2 23 450 472 449 472 0.96 14 19 3.6e-05 0.0035 18.7 2.9 2 23 479 501 478 501 0.92 15 19 0.051 4.9 8.8 1.2 1 23 507 530 507 530 0.89 16 19 0.049 4.6 8.9 2.5 2 23 538 560 538 560 0.96 17 19 0.11 11 7.7 0.0 1 23 567 590 567 590 0.91 18 19 0.0015 0.14 13.7 0.1 1 23 597 620 597 620 0.97 19 19 0.00048 0.046 15.2 2.2 5 23 635 654 632 654 0.91
Sequence Information
- Coding Sequence
- ATGTCGAGCAATGAAAACTCCTGCGATAAGCCCAAGGAGTACATCTGCGACTACTGCACCCGCACCTTCACGCGGTACTACAACCTGCAGACACACATCGAGAACTGCCACCTCAACTCCTCGTGCTGCTGCGAGATCTGCTACCAGAGCTTCGGCAGCCCGGCCGGCCTGCAGCAGCACCTCAGCCGCGGCCACAACCGCTTCGGCCAGGGGCTGCCGGAGTGCGACATCTGCGGCAGGATATACGCCAGGAAGCAGAACATCGCCACCCACATGCTCACCACCCACCTGCTGAGCTCCCGCCCCGAGATCCGCTGTCACCTCTGCTGCAAGGTGTTCACCACCGAGCGCAACCTCCGCCGCCACGCCGCCATGCTCCACAACCCCGACTTCGAGTACCTCACCTGCGATACCTGCAAGAGGATCTTCAAGGGCAAAGATTCGCTGATCACCCACATTCAAACCGTGCACGCGCCGCTCAAGGACCTCATCAAATGTCACGAGTGCGACAAAATTTACACCAACAAAAGAAATCTAAAGCGCCACATCGAGATGAGCCACGAGAGGAGAGTCGAGTTCAAATGCTCGAGGTGCACGAAATCTTACACGTCCAAGCAGAGTTTGAAACGACACGAACAGAGCGTCCACTCGGAGAACCACGATGGCGGCTCGCCACCGCCGCGGCCCACTTCCACCGAGGGCCGCGACGAAACGAACTTCTCGATGGAGATGGAGGAGCACGAGAGAAACGGTGGATCTCGACACAGAGATCTAGGGAATCGGGTCGCTTGTGAAACTTGCTCCGCGATATTTTTCGAGGAGGCGCAGCTGCGAAGGCACATAAAAGAAACTCATACATTCCaagacttctacaaatattgtaggaaagtTCTCCTGCTGAGGTCCGGCGACCTGACGACACATAGCGGCAGCGGGAAGTGGCACCGCTGCGATATGTGCTCGGAGTACTTCGGCACGGTGACCGAGCTCGAGCGTCACGTCGGGTCGAGGCACGGCAGGGCGTACCGTCCGTCCACGTGCAACGTTTGCTTTCGACGTTTCTACAGCAGGGAGTCGATTGCCGAACACAAAACTGTGTGCGTCCCTCCCCCGGACGCCAACCCCTGCGGGCACTGCGACCGGCTGTTCACCGACGTGTCGAGCCTGGAGTTCCACATCAAAATATTTCACCCGCGAGCGCAGATCGCCGACTCGAACGTCTCGTCGACGTTCGCGGAGGAGCCCGCCGAGATCGTGTTTAAATGCGGCCGCTGCGAGCGAGTGTACTACGCCGAGCGCTCCCTCCGGCACCACGTCAAACTGAAGCACGGCCTGGACGAGGAGGTGCAGTGCCAGCTGTGCGGCCGGGTCTGCAGCAACAAGTACTACCTGGCGTCGCACACGAAAATAGTGCACAATGACGACGACCGGTCCAAGTGCAAGTACTGCGGGAAGCAGTTCAAAACGAGGAGGAACATCCGCCGCCACATCGAGTTCACCCACCTCGGCCGGCAGAGGTACCGGTGCATCGCCTGCGACACCCTGTTCAAGGAGAAGCGGAGCCTGAGGAAGCACGTGCGCATCAAGCACCCCGACTCCGATCTGTTCCCGCAGTGCCACGTCTGCCTGAAGCGGTTCGAGTCGGCCAAGTCGCGCAAGATCCACCTGAAGCTCCTGCACTCGGTCAACGTGAGCACGTTCCCGTGCGGCGCGTGCACGATGTCGTTCGCGTCGCAGGCGGCGCTGGACGAGCACCTGGCGGCCGAGCACCTCGCCGACAGCGAGATCTACAAGTGCGAGGACTGCGGCCTCGTGCTGGAGGGGCAGGCGACGTACGAGCGGCACCGGCGCGCGCGGCACGCGGGCACCCCCGGGCGGCCCGGACAGCCGCCGCGCTGCATCCTCTGCGACAAGGACTTCAGCTCGCGGAAGACCCTGAGGAGGCACATCAGGAACTTCCACAAAGAGTTCGAGGACGATGAGCTGGCGAGGCTGTGCTCCGCGCGGCCCGCCGGCGTCGACTGCGCGGCCTGCATCAGGAACTTCGCCGACGACTACTACTACGACGTGTACCTAAAGGTGAAGGACGTGCCCGACGCGGTGGTGTTCAAGTGCGAGTTCTGCAAATCCTCCTACGGCCGCTTCGAGTACCTGGTGCTTAGGCACAAGCAGACCTTCGATATGAGCAGGAGCAGGAGCTACTTGAGCGAGCTGTGCACGGCGGAGATGAGCGAGGAGTCGGGGCAGTCGGACGACGACGGGGGGCCGGACACCGCGCCCATGGAGCCGGAGAGCACCACCGCCGATGTGAAAATCGAGTTCACTCAGATGCTCGACTGCAAAATCAAGTCGGAACCGCAATCTCCAAAAAGTAGTGAtgttgaataa
- Protein Sequence
- MSSNENSCDKPKEYICDYCTRTFTRYYNLQTHIENCHLNSSCCCEICYQSFGSPAGLQQHLSRGHNRFGQGLPECDICGRIYARKQNIATHMLTTHLLSSRPEIRCHLCCKVFTTERNLRRHAAMLHNPDFEYLTCDTCKRIFKGKDSLITHIQTVHAPLKDLIKCHECDKIYTNKRNLKRHIEMSHERRVEFKCSRCTKSYTSKQSLKRHEQSVHSENHDGGSPPPRPTSTEGRDETNFSMEMEEHERNGGSRHRDLGNRVACETCSAIFFEEAQLRRHIKETHTFQDFYKYCRKVLLLRSGDLTTHSGSGKWHRCDMCSEYFGTVTELERHVGSRHGRAYRPSTCNVCFRRFYSRESIAEHKTVCVPPPDANPCGHCDRLFTDVSSLEFHIKIFHPRAQIADSNVSSTFAEEPAEIVFKCGRCERVYYAERSLRHHVKLKHGLDEEVQCQLCGRVCSNKYYLASHTKIVHNDDDRSKCKYCGKQFKTRRNIRRHIEFTHLGRQRYRCIACDTLFKEKRSLRKHVRIKHPDSDLFPQCHVCLKRFESAKSRKIHLKLLHSVNVSTFPCGACTMSFASQAALDEHLAAEHLADSEIYKCEDCGLVLEGQATYERHRRARHAGTPGRPGQPPRCILCDKDFSSRKTLRRHIRNFHKEFEDDELARLCSARPAGVDCAACIRNFADDYYYDVYLKVKDVPDAVVFKCEFCKSSYGRFEYLVLRHKQTFDMSRSRSYLSELCTAEMSEESGQSDDDGGPDTAPMEPESTTADVKIEFTQMLDCKIKSEPQSPKSSDVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00935020;
- 90% Identity
- iTF_00164579; iTF_00935020; iTF_00934050; iTF_00404025; iTF_01217680;
- 80% Identity
- -