Lbel012091.1
Basic Information
- Insect
- Lysandra bellargus
- Gene Symbol
- -
- Assembly
- GCA_905333045.1
- Location
- HG995320.1:16802645-16805032[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.1e-05 0.0017 19.3 4.0 1 23 14 37 14 37 0.95 2 19 0.0039 0.32 12.2 1.6 2 23 43 65 42 65 0.94 3 19 0.00013 0.011 16.8 0.1 2 23 74 96 74 96 0.97 4 19 0.0021 0.18 13.0 1.4 2 23 105 127 104 127 0.93 5 19 6.3e-05 0.0052 17.8 0.4 2 23 135 157 134 157 0.96 6 19 1.1e-06 9.1e-05 23.4 2.4 2 23 165 187 164 187 0.96 7 19 5.9e-05 0.0048 17.9 3.4 1 23 193 216 193 216 0.96 8 19 0.047 3.8 8.8 0.2 3 23 264 285 263 285 0.95 9 19 0.11 9.1 7.6 2.6 1 23 314 337 314 337 0.91 10 19 0.16 13 7.1 0.5 2 20 345 363 344 365 0.91 11 19 0.022 1.8 9.8 0.6 3 23 375 396 374 396 0.95 12 19 0.072 5.9 8.2 2.4 1 23 419 442 419 442 0.96 13 19 1.3e-05 0.001 20.0 0.9 2 23 449 471 448 471 0.97 14 19 2.2e-05 0.0018 19.3 3.1 2 23 478 500 477 500 0.92 15 19 0.046 3.8 8.8 1.2 1 23 506 529 506 529 0.89 16 19 0.044 3.6 8.9 2.5 2 23 537 559 537 559 0.96 17 19 0.0088 0.72 11.1 0.0 1 23 566 589 566 589 0.92 18 19 0.0005 0.041 15.0 0.2 1 23 596 619 596 619 0.98 19 19 0.00044 0.036 15.2 2.2 5 23 635 654 632 654 0.91
Sequence Information
- Coding Sequence
- ATGTCAAGCAATGAAAACTCCTGCGACAAGCCCAAGGAGTACATCTGCGACTACTGCACCCGCACCTTCACGCGGTACTACAACCTGCAAACGCACATAGAGAACTGCCACCTCAACTCCTCATGCTGCTGCGAGATCTGCTACCAGAGTTTCGGCAGCCCGGCCGGCCTGCAGCAGCACCTCAGCCGCGGCCACAACCGCTTCGGCCAGGGGCTGCCGGAGTGCGACATCTGCGGCAGAATATACGCCAGGAAGCAGAACATCGCCACCCACATGCTCACCACCCACCTGCTGAGCTCCCGCCCCGAGATCCGCTGCGACCTCTGCTGCAAGGTGTTCACCACCGAGCGCAACCTCCGCCGCCACGCCGCCATGCTCCACAACCCCGACTTCGAGTACCTCACCTGCGACACCTGCAAGAGGATCTTCAAGGGCAAAGATTCGCTGATCACCCACATCCAAACGGTGCACGCGCCGCTCAAGGACCTCATTAAATGTCACGAGTGTGACAAAATTTACACCAACAAAAGAAATCTAAAGCGTCACATCGAGATGAGCCACGAGAGGAGAGTCGAGTTCAAATGCTCGAGGTGCACGAAATCTTACACGTCCAAGCAGAGTCTGAAACGACACGAACAGAGCGTCCACTCGGAGAATCACGATGGCCGCTCGCCAACGCCGCGTCCCACTTCGACCGAGGGCCGGGACGAAACGAACTTTTCGATGGAGATGGAGGAGCACGAGAGAAACGGTGAATCTCGACACAGAGATCTAGGGAATCGGGTCGCTTGTGAAACTTGCTCCGCGATATTTTTCGAGGAGGCGCAGCTGCGAAAGCACATAAAAGAAACTCATACATTCCAAGACTTCTACAAATACTGTAGGAAAGTTCTGCTGAGGTCCGGCGACCCGACGACACATAGCGGCAATGGGAAGTGGCACTGCTGCGATATGTGCTCAGAGTACTTCGTCACTGCGATCGAGCTCGAGCATCACGTCGGGTCGAGGCACGGCAGAGCGTACCGTCCGTCCACGTGCAATGTTTGCTTTCGACGTTTCTACAGCCGGGAGTCGATCACCGAACACAAAACGGTGTGCGTCCCTCCCCCGGACGCCAACCCCTGTGGGCACTGCGACCGGCTGTTCACCGACGTGTCGAGCCTGGAGTTCCACATCAAAATATTTCACCCGCGAGCGCAGATCGCGGACTCGAACGTCTCGTCGACTTTCGTGGAGGAGCCCGCCGAGACCGTCTTCAAATGCGGCCGCTGCGAGCGAGTGTACTACGCCGAGCGCTCCCTCCGACACCACGTCAAACTGAAGCACGGCCTGGACGAGGAGGTGCAGTGCCAGCTGTGCGGCCGGGTCTGCAGCAACAAGTACTACCTGGCGTCGCACATGAAAATAGTGCACAACGACGACGACTGGTCCAAGTGCAAGTACTGCGGAAAGCAGTTCAAAACGAAGAGAAATATCCGCCGCCACATCGAGTTCACCCACCTAGGTCGACAGAGGTACAGGTGCATCGCTTGCGACACCCTGTTCAAGGAGAAGCGGAGCCTGAGGAAGCACGTGCGCATCAAGCACCCCGACTCCGATCTGTTCCCGCAGTGCCACGTCTGCCTGAAGAGGTTCGAGTCGGCCAAATCGCGCAAGATCCACCTGAAGCTCCTGCACTCGGTCAACGTAAGCACGTTCCCGTGCGGCGTGTGCACGATGTCGTTCGCGTCGCAGGCGGCGCTGGACGAGCACCTGGCGGCCGAGCACCTCGCCGAGAACGAGATCTACAAGTGCGAGGATTGCGGGCTCGTGCTGGAGGGGCAGGCGACGTACGAGCGGCACCGGCGCTCGCGGCACGCGGGGCCCGGCGGCGGGCGCTCCGACCAGCCACCGCGCTGCATCCTCTGCGACAAGGACTTCAGCTCGCGGAAGACCCTGAGGAGGCACATCAGGAACTTCCACAAGGAGTTCGAGGACGAGGAGCTGGCGAGGCTGTGCTCCGCGCGGCCTGCCGGCGTCGAGTGCGCGGCCTGCATCAGGAACTTCGCCGACGACTACTATTACGACGTGTACCTGAAAGTGAAGGACGTGCCCGACGCGGTGGTGTTCAAGTGCGAATTCTGCAAATCCTCCTACGGCCGCTTCGAGTACCTGGTGCTTCGGCACAAGCAGACCTTCGATATGAGCAGGAGCAGGAGCTACTTGAGTGAGCTGTGCACGGCGGAGATGAGCGAGGAGTCGGGGCAATCGGACGACGACGGGGGGCCGGACTCCGCGCCCATGGAGCCGGAGAGCACCACCGCCGATGTGAAATTCGAGTTCACTCAGATGCTCGACTGCGAAATCAAATCAGAACCGCAATCTCCAAAAAGTAGTGATGTTGAATAA
- Protein Sequence
- MSSNENSCDKPKEYICDYCTRTFTRYYNLQTHIENCHLNSSCCCEICYQSFGSPAGLQQHLSRGHNRFGQGLPECDICGRIYARKQNIATHMLTTHLLSSRPEIRCDLCCKVFTTERNLRRHAAMLHNPDFEYLTCDTCKRIFKGKDSLITHIQTVHAPLKDLIKCHECDKIYTNKRNLKRHIEMSHERRVEFKCSRCTKSYTSKQSLKRHEQSVHSENHDGRSPTPRPTSTEGRDETNFSMEMEEHERNGESRHRDLGNRVACETCSAIFFEEAQLRKHIKETHTFQDFYKYCRKVLLRSGDPTTHSGNGKWHCCDMCSEYFVTAIELEHHVGSRHGRAYRPSTCNVCFRRFYSRESITEHKTVCVPPPDANPCGHCDRLFTDVSSLEFHIKIFHPRAQIADSNVSSTFVEEPAETVFKCGRCERVYYAERSLRHHVKLKHGLDEEVQCQLCGRVCSNKYYLASHMKIVHNDDDWSKCKYCGKQFKTKRNIRRHIEFTHLGRQRYRCIACDTLFKEKRSLRKHVRIKHPDSDLFPQCHVCLKRFESAKSRKIHLKLLHSVNVSTFPCGVCTMSFASQAALDEHLAAEHLAENEIYKCEDCGLVLEGQATYERHRRSRHAGPGGGRSDQPPRCILCDKDFSSRKTLRRHIRNFHKEFEDEELARLCSARPAGVECAACIRNFADDYYYDVYLKVKDVPDAVVFKCEFCKSSYGRFEYLVLRHKQTFDMSRSRSYLSELCTAEMSEESGQSDDDGGPDSAPMEPESTTADVKFEFTQMLDCEIKSEPQSPKSSDVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00935020;
- 90% Identity
- iTF_01248400;
- 80% Identity
- -