Pfla042358.1
Basic Information
- Insect
- Polymixis flavicincta
- Gene Symbol
- -
- Assembly
- GCA_949987655.1
- Location
- OX465201.1:7426723-7433518[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.4 50 6.0 0.2 1 23 93 116 93 116 0.95 2 17 2.4 3.1e+02 3.5 0.0 2 23 142 164 141 164 0.94 3 17 0.0021 0.27 13.2 2.2 2 23 187 208 186 208 0.96 4 17 2.7e-06 0.00034 22.3 0.9 1 23 212 234 212 234 0.97 5 17 0.0034 0.43 12.5 0.4 1 23 239 262 239 262 0.97 6 17 2.3 2.9e+02 3.6 0.2 2 12 270 280 270 292 0.81 7 17 8.2e-05 0.01 17.6 5.0 1 23 299 322 299 322 0.95 8 17 2.2e-05 0.0028 19.4 2.1 1 23 328 350 328 350 0.97 9 17 0.18 23 7.1 0.2 1 17 356 372 356 373 0.88 10 17 0.043 5.4 9.1 0.5 1 23 408 434 408 434 0.88 11 17 0.006 0.76 11.8 0.6 2 23 506 527 505 527 0.96 12 17 0.18 22 7.1 0.2 1 23 531 553 531 553 0.96 13 17 2.1 2.6e+02 3.7 4.0 1 23 558 581 558 581 0.89 14 17 0.75 95 5.2 3.9 1 19 587 605 587 610 0.84 15 17 0.0011 0.14 14.1 0.5 2 23 618 640 617 640 0.96 16 17 0.00018 0.022 16.6 0.9 3 23 648 668 647 668 0.98 17 17 0.002 0.25 13.3 3.0 1 23 674 696 674 696 0.97
Sequence Information
- Coding Sequence
- ATGATCCGATTATGTAGTGCAATAATTAAAGCAGCAACTCTTGTTGTAGATGCCCATCGGAATATAAAAGCTATagagaatgatgatgacaaaGCACAGAGCAACGTACAGAAAACTAAAGCGCAGGAGAATAAAAAAACTCCACAAGCTGTAGATGAGAAAGATATGAACAGCGTACAGAAAAACAAGACTTTATTGGCAAATTTCAAAGAGACAGTACGCTCTGTCCTAAGATATACAAACGCTACGCCTATCCGTGGTTACTGGGGCATCGGATACACTTGCATCTACTGCAAATATCAAGCCCCAGAACCTTCAGCGCTCAAACAGCACACTCTAACAACACATTCCGAAAATGTTGACGAACTTAACAACGCGAAATACGTATCAGACATGATCATTAAACTAGACATCACAGACCTCGAATGCGGGCTATGTAGCCGTGAAATAGAAACCCTTGAAGAAATCTTGAACCATATAAAAGTTATTCATGCACAGCCGATACATTTCGACACTTCCAATCATATCGTACCGTTTAAATTCGGAAAGAAGGATTTAACATGCGCTCTTTGCGacaaacagttttattatttcaaacatTTGTCTGAACATATGAATGAGCACTTCCCAAATTATGCATGTAAGGAATGCAATCGTGTTTTCATTAATCAACGCTCTTTACGAACACACATGGTGAGACATCAAACAGGCACGTTCGTCTGCGCGTTTTGCTCCAAAATCTTCGACACCAGAACCAAAATGATGGCACACGAAAGAGTCTTACACTTAAAAGGTTCTAAAAATCGTAAATGTGGGTATTGTGACGAGAGATTTATGGATGCGTTAAGGAAGACGGAACATGAGGTGAAGGAGCATGGCGCTCCAGTTCGCACATTTGATTGCAAGGAGTGCGGGAAGTGTTTTGACAGTCAACGTTCTGTCAAGAATCACATGAACCATCTTCATCTGCAGCTTAGACCGCACAAGTGCCCGGAATGTGGCAAAggattttacaataaaattgagatGAAACGGCATCGAGTAAAACATACTAAGATCAAAGAGTTCCAATGCTCGGTTTGCTCTAAATTCTTCGTTGCTAGAGCTTCTCTTAGAGACGAACTGGACTCGAACCGAGAGAAGACGTTCCAATTTATAAAAGAAATCAAAGCCATTCTTACATTCACAAACGCGACTCCTTACAAATCGAAGAGCGTTCGCTACTACTGCGCTTACTGCTCCACCGATGGACCTCACTTCGAGAACCCCGACGACCTCCGAACTCACACGAGGACCGAACACGTCGGCCACAGAACAGAGAAGATAGAATACGCCATGCGACCTTATTGGATGAATGAGGTAATCAAACTTGACATAGAAAACCTCCTTTGTACCGTTTGTTGTGTAGTCATAAACAATTGGAACGAAATGTTCAAACATTTGAAAGAAAAGCATAGTGTAGTTCTAGATCAAGCGTATACAAGAGTCATTCCTTACGTTTTAAAACAGGATCTTCAATGCGCGTTGTGCAAAGAATCTTTCAGCAACTATCTTCATTTAGACGGTCATATGAACGCtcattacaataattatgtctGCGATGACTGTGGAGATACTTTTCTAGCCCAAAACCGTTTAAAACAGCACGTTAAAATCCACAACATTGGCAAATTCTGCTGTCGTTTCTGCGTAAAAGTTTTCACTTTACAAAAATATAGACGAAAACATGAAGAGCTGGTGCATCAGCAAGTCTTAAAATTCAAATGTCTTTACTGCCCTGAGAAGTTCACAAGAGAATATATGAGACACCTACATTGCCTAGAAAAGCACTCGGAAAAAGTTAAAACTATAACCTGCGAGCTATGTGGGGAAAGCTTTACTTGGAAGCAGTACTATTTGAAACATATTAGGATGAAACATGAGAACAAGAAATCGGTTGCTTGCAACAAGTGCGATAAAAGATTCTTTGGGAACTACGAGCTCAAAGAACATTTGCTAAGACATGTTGGGattaaaaatttcgaatgtcaaATTTGTCATAAGAAGTACGTGTCAATGAATTCGTTGAAGCAGCATGGGAAACAACACAAAAAGAAGAACGAAGCGTGA
- Protein Sequence
- MIRLCSAIIKAATLVVDAHRNIKAIENDDDKAQSNVQKTKAQENKKTPQAVDEKDMNSVQKNKTLLANFKETVRSVLRYTNATPIRGYWGIGYTCIYCKYQAPEPSALKQHTLTTHSENVDELNNAKYVSDMIIKLDITDLECGLCSREIETLEEILNHIKVIHAQPIHFDTSNHIVPFKFGKKDLTCALCDKQFYYFKHLSEHMNEHFPNYACKECNRVFINQRSLRTHMVRHQTGTFVCAFCSKIFDTRTKMMAHERVLHLKGSKNRKCGYCDERFMDALRKTEHEVKEHGAPVRTFDCKECGKCFDSQRSVKNHMNHLHLQLRPHKCPECGKGFYNKIEMKRHRVKHTKIKEFQCSVCSKFFVARASLRDELDSNREKTFQFIKEIKAILTFTNATPYKSKSVRYYCAYCSTDGPHFENPDDLRTHTRTEHVGHRTEKIEYAMRPYWMNEVIKLDIENLLCTVCCVVINNWNEMFKHLKEKHSVVLDQAYTRVIPYVLKQDLQCALCKESFSNYLHLDGHMNAHYNNYVCDDCGDTFLAQNRLKQHVKIHNIGKFCCRFCVKVFTLQKYRRKHEELVHQQVLKFKCLYCPEKFTREYMRHLHCLEKHSEKVKTITCELCGESFTWKQYYLKHIRMKHENKKSVACNKCDKRFFGNYELKEHLLRHVGIKNFECQICHKKYVSMNSLKQHGKQHKKKNEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039178;
- 90% Identity
- -
- 80% Identity
- -