Alyc042227.1
Basic Information
- Insect
- Agrochola lychnidis
- Gene Symbol
- -
- Assembly
- GCA_963680765.1
- Location
- OY796877.1:8595164-8603514[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1 1.3e+02 4.7 0.1 1 23 85 108 85 108 0.88 2 18 1.9 2.4e+02 3.9 0.2 1 23 217 240 217 240 0.91 3 18 0.47 59 5.8 0.1 2 23 266 288 265 288 0.92 4 18 0.0019 0.24 13.3 2.0 2 23 311 332 310 332 0.96 5 18 0.0074 0.93 11.5 1.3 1 23 336 358 336 358 0.97 6 18 0.012 1.5 10.8 0.5 1 23 363 386 363 386 0.97 7 18 1.6 2e+02 4.1 0.3 2 19 394 411 394 416 0.76 8 18 0.00011 0.013 17.3 1.9 1 23 423 446 423 446 0.96 9 18 4.8e-05 0.006 18.3 3.1 1 23 452 474 452 474 0.97 10 18 8.3e-05 0.01 17.6 0.7 1 23 480 502 480 502 0.99 11 18 0.11 13 7.8 0.4 2 23 547 572 546 572 0.82 12 18 0.0074 0.93 11.5 0.6 2 23 644 665 643 665 0.96 13 18 1 1.2e+02 4.8 0.6 1 23 669 691 669 691 0.90 14 18 0.052 6.4 8.8 1.7 1 23 696 719 696 719 0.91 15 18 2.7 3.3e+02 3.4 2.7 1 14 725 738 725 748 0.81 16 18 0.018 2.2 10.3 1.0 2 23 756 778 755 778 0.96 17 18 1.2e-05 0.0015 20.2 2.6 1 23 784 806 784 806 0.99 18 18 0.0024 0.3 13.0 3.0 1 23 812 834 812 834 0.97
Sequence Information
- Coding Sequence
- ATGAATATTACCGAAACAAAAGTAATTGCCATAGAGATTAATATGGAGCCTAAGAATGAAGAAATAGATGTCCCTGTGAACGCCAATCAAGTCCGAACGCGATACAAGGCTATAGTCAACGAcaaattcaaaaaagaaaataaagtgcCCGAGAAATTTGAAGTCCACGAAATGAATAAACATAAAGTCAATATAAAGactatattacaaaattctaacGCGACCATCATCAAAGGATTCTGGGGAACTGGTTATTCTTGTAATTTTTGCGACGAACAGAGAGAAATACCTTCAGAATTAAAGCTGCATAACTTAGAAGCTCATAGCAATGTAGGAGACGAAGCAATCAAAGTTAAATATGTATCAGATTTAGTTATAAGACTAGACATTACCGATCTCAAATGCAAACTATGCAACACAAATGCCCATCGGAATAAAAAGGCTACAGATAATGAAAATGGCAACGCTAAGAGCAACGTACAGAAAAACAAAGCGCAGGGGAATAAAAACAGTACACAGGCTGAAGATGAGACAGATATAAACAGCATACAAAAAAACAGGAACCTTCTGGCAAGATTCAAAGCGAGCGTACGTTCTGTCCTTAGATGCACAAACGCTACACCAATCCGAGGTTACTGGGGCATCGGATATGCTTGCATCTACTGCAAATATCAAACCCCTGTAATTTCAGCGCTGAAAAACCACACACTGACAACACATTACGATAATGTTGACGAACTTGACAACGTCAAATACGTTTCAGACATGATCATTAAATTAGACATAACTGACCTCAAATGCGAGATATGTGACCGTGAAATGGAAACCCTAGAAGAAATCATGAAccatataaaatttattcaCAGACAACCCATCCATTTAGAAACTAGCAATCATATCATTCCATTTAAATTCGGAAAGGAGGATTTATCATGCGCTCTTTGCGATAAACAGTTTAATTATTTCAAACATTTATCTGAACATATGAATGAACACTTTCCAAACTATACATGTAAGGAATGCAATCGATGGTTCATCAACCTACGCTCTTTACGAACTCACTCGATCAGACATCAAACAGGCACGTTTGTCTGCGCGTTTTGTTCCAAGATCTTCGACACCCGAATAAAAATGAAAGAACACGAAAGAGTCTTACATCTAAAAGGTTCTAAAAATCGTAAATGTGGGTATTGTGACGAGAGATTCATGGATGCTGTAAGGAAGACGGAACATGAGGTGAAGGAGCATGGCGCTCCAGTTCGTAAATTTCCTTGCAAAGACTGCGGGAAACTTTTTGACAGTCAACGTTCTGTAAAGAATCATATGAACCATCTCCATTTGCAGCTAAGACCGCACAAGTGCCCGGAATGTGACAAgggattttataataaaaatgagaTGAAACGTCATAGAGTAAAACATACTAAGATCAAGGAGTTTCAATGCTCGGTTTGCTCAAAATACTACGTTTCTAGAGGTTCTCTTCGAGGTCATATGAAAATACATGATATTGAAACGACTTATACTTGCAGCGAAGTGGACTCGAACCGAGAGAAGATGTACCAACTAATAAAAGAAATCAAAGCTATTCTAACATTCACGAACGCGACCCCTTATAAGTCTAAGAACGTTCGCTACTTCTGCGCGTATTGCTCCACCGACGGACCTCATTTCGAGGACCCCGACGACCTCCGAACCCACACGAGGACCGAACACGTCGGCCACAGAACAGAGAAAATAGAATACGCCATGCGACCGTATTGGATGAACGAGGTAATAAAACTTGATATAGAGAACCTCCTTTGTACTGTTTGCTGCGTAGTCATAAACAATTGGAACGAAATGTTCAAACATTTGAAAGATAAGCATAATGTAGTATTAGATCAAGCGTATACTAGAGTAATTCCGTACGTTTTGAAGACAGATCTTCAATGCGCGTTGTGCAAAGAATCTTTTTCTAACTACCTTCATTTAGACGGTCATATGAACGCTCATTACAATAACTATGTATGTGATGACTGCGGAGACACTTTTTTAGCCCACAACCGTTTAAAACAGCACGTGCAAATCCATAACGTTGGCAAGTTCGAGTGCAGGTTTTGTGAAAAAGTGTTTACACTCCAAAAATATAGGAGGAAACATGAAGAGTTGGTTCATCAGCAACTTTCTAAGTTCAAATGTTTGTACTGCCCTGAGAGGTTCACAGGTGAGTACCTAAGACACTTACATTGTCTAGAAAAGCACgcggaaaaaattaaaaccattACCTGCGAATACTGTGGGGACAGTTTTACTTGGAAACAGTACTATACTAGCCATATTAGGAAAAAACATGAGAACAGGAAATCGTACAAATGTAGCAAGTGCGACAAGAAATTCTTTGGTAATTACGAGCTGAAGGAACATATGTTGAGGCATGTCGGTACCAAGAACTTTGAATGTCAAATTTGCCATAAGAAGTATGTGTCAATGAATTCATTGAAGCAGCATGGGAAACAGCATACGAAGAAAAATGAAGCATCATGA
- Protein Sequence
- MNITETKVIAIEINMEPKNEEIDVPVNANQVRTRYKAIVNDKFKKENKVPEKFEVHEMNKHKVNIKTILQNSNATIIKGFWGTGYSCNFCDEQREIPSELKLHNLEAHSNVGDEAIKVKYVSDLVIRLDITDLKCKLCNTNAHRNKKATDNENGNAKSNVQKNKAQGNKNSTQAEDETDINSIQKNRNLLARFKASVRSVLRCTNATPIRGYWGIGYACIYCKYQTPVISALKNHTLTTHYDNVDELDNVKYVSDMIIKLDITDLKCEICDREMETLEEIMNHIKFIHRQPIHLETSNHIIPFKFGKEDLSCALCDKQFNYFKHLSEHMNEHFPNYTCKECNRWFINLRSLRTHSIRHQTGTFVCAFCSKIFDTRIKMKEHERVLHLKGSKNRKCGYCDERFMDAVRKTEHEVKEHGAPVRKFPCKDCGKLFDSQRSVKNHMNHLHLQLRPHKCPECDKGFYNKNEMKRHRVKHTKIKEFQCSVCSKYYVSRGSLRGHMKIHDIETTYTCSEVDSNREKMYQLIKEIKAILTFTNATPYKSKNVRYFCAYCSTDGPHFEDPDDLRTHTRTEHVGHRTEKIEYAMRPYWMNEVIKLDIENLLCTVCCVVINNWNEMFKHLKDKHNVVLDQAYTRVIPYVLKTDLQCALCKESFSNYLHLDGHMNAHYNNYVCDDCGDTFLAHNRLKQHVQIHNVGKFECRFCEKVFTLQKYRRKHEELVHQQLSKFKCLYCPERFTGEYLRHLHCLEKHAEKIKTITCEYCGDSFTWKQYYTSHIRKKHENRKSYKCSKCDKKFFGNYELKEHMLRHVGTKNFECQICHKKYVSMNSLKQHGKQHTKKNEAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01247410;
- 90% Identity
- -
- 80% Identity
- -