Pfla011475.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polymixis flavicincta
Gene Symbol
-
Assembly
GCA_949987655.1
Location
OX465176.1:18301692-18317800[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 7.3e-05 0.0092 17.8 2.2 1 23 205 227 205 227 0.97
2 20 0.0038 0.48 12.4 0.6 1 20 233 252 233 255 0.94
3 20 1.9e-05 0.0024 19.6 5.6 1 23 274 296 274 296 0.98
4 20 8.9e-05 0.011 17.5 4.1 1 23 302 324 302 324 0.99
5 20 3.4e-05 0.0043 18.8 5.3 1 23 330 352 330 352 0.97
6 20 7.7e-06 0.00098 20.8 7.4 1 23 358 380 358 380 0.97
7 20 6.5e-07 8.2e-05 24.2 2.9 1 23 386 408 386 408 0.97
8 20 9.3e-05 0.012 17.5 6.7 1 23 414 436 414 436 0.97
9 20 9.2e-05 0.012 17.5 6.5 1 23 442 464 442 464 0.97
10 20 4.5e-07 5.6e-05 24.8 1.9 1 23 470 492 470 492 0.98
11 20 8.8e-06 0.0011 20.7 7.7 1 23 498 520 498 520 0.98
12 20 0.00012 0.015 17.1 6.8 1 23 526 548 526 548 0.97
13 20 1.8e-06 0.00023 22.8 4.2 1 23 554 576 554 576 0.98
14 20 6.1e-06 0.00076 21.2 5.0 1 23 582 604 582 604 0.96
15 20 9.9e-06 0.0012 20.5 5.0 1 23 610 632 610 632 0.98
16 20 2.8e-06 0.00035 22.2 6.0 1 23 638 660 638 660 0.98
17 20 5.4e-05 0.0068 18.2 7.9 1 23 666 688 666 688 0.97
18 20 5.5e-06 0.00069 21.3 5.4 1 23 694 716 694 716 0.98
19 20 0.00067 0.084 14.8 0.3 1 23 723 745 723 745 0.96
20 20 0.29 36 6.5 4.9 1 23 757 779 757 779 0.99

Sequence Information

Coding Sequence
atgATTCAACTGACGGTAAGCGAGGATGGCATAGTGACGGTGGTGGAGCCGGCGGGCACAAAGCTGGTCGACAAGGAGGAACTCCATGAGGCTATCAAGATGCCCAACGACCACACGCTCACGGTGCACCAGCTGCAGCAGATAGTGGGACAACAGGTTCTAGACAGCGTAGTACGCATAGAGCAAGCGACTGGTGAGCCGGCGAACATCTTAGTGACCCACAATCCTGATGGTACGACCTCTATTGAAGCCAGTGCCGCCGACCCTCTGATTGTCAAAGATGAGAAGAATGCTAACAAAATAGAAACTGCACAGTTTGCCATACCTACTGAGATAAAGGATATAAAAGGAATTGACTTGAAGAGTGTAGGAGCCATGGGCATGGAAGGTGCAGTAGTGAAGATATCAGCCGGCGCTTCAGAACATGACCTCCACGCTATGTATAAAGTCAATGTAGAAGATCTGTCACAACTGCTTGCTTACCATGAAGTGTTCGGAAAACTTAATTCGGAAGGCCAGCAACAACAAGCAAAGGTAATAAGCGAAGTGGAAGTCGAAGTGGAAGCCGGCACCAGCGCAGCCATGTCTGAAGCAGAATCCTCGCCCGGGCATCACTCGTGTGATATTTGCGGGAAAATATTCCAGTTCCGATACCAACTTATCGTTCATAGGCGTTATCACGGCGAAAGTAAACCATTTACGTGTCAAGTTTGCGGTTCTGCATTTGCAAATCCTGTTGAACTGTCGAGGCATGGAAAATGTCATCTTGCCGGAGACCCGAACGAAAGACACGCCAAGAGATTGGCGCAAGATAAGCCATACGCTTGCACAACTTGCCACAAAACCTTCTCCCGTAAAGAACATTTGGACAATCACGTTCGAAGTCACACTGGGGAAACTCCTTACAGATGCGAATTCTGCGCGAAGACTTTCACCCGCAAAGAGCACATGGTCAACCACGTACGAAAACATACCGGCGAAACTCCGCACcgctgtgatatttgcaagAAGAGCTTCACCAGGAAAGAGCATTTCATGAACCACGTTATGTGGCACACAGGTGAAACGCCGCACCACTGTACAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGCGATCTCACACGAACGATACTCCATTCCGATGCGAACTGTGCGGCAAGTCGTTCACGAGAAAGGAACACTTCACCAATCACATACTGTGGCATACGGGAGAAACCCCTCACCGCTGCGACTTCTGTTCCAAAACGTTCACACGTAAGGAGCATCTCCTGAATCATGTCCGTCAGCACACGGGCGAGTCGCCTCACCGCTGCAACTTCTGCAGCAAGTCATTCACGCGACGGGAACATCTCGTCAACCACGTACGGCAACATACTGGGGAAACGCCCTTCCAGTGCGGATACTGTCCTAAAGCGTTCACAAGGAAGGATCACCTCGTGAACCACGTCCGTCAGCATACAGGCGAATCCCCGCACAAATGCTCGTACTGCACAAAGTCCTTCACTCGCAAGGAACACCTGACGAACCATGTGCGACAACACACGGGCGAGTCTCCTCACCGGTGTACTTTCTGCGCCAAGTCCTTCACGAGGAAGGAACACCTCACTAACCACGTTAGACAGCACACGGGAGAAACGCCACACAAGTGTACGTACTGCCCGAGGGCCTTCGCGCGCAAGGAGCATCTCAACAACCACATCCGACAGCACACCGGCGTGACGCCGCACGCCTGCTCCTACTGCAGCAAGAGTTTCACCAGGAAGGAACATCTCGTTAACCATATTCGGCAACACACGGGCGAGACTCCGTTCAAGTGTACGTTCTGTTCAAAGTCGTTCTCTCGTAAGGAGCACCTCAATAACCACGTGAACCTTCACACAGGAGAAACGCCACACAAATGTCCCTTCTgcacaaaaacattttccagAAAGGAACATTTGACCAACCACGTCAGGATTCACACGGGCGAGTCTCCGCACCGCTGCGACTTCTGCCAGAAGACGTTTACTCGTAAGGAGCACTTGACGAATCATCTGAAGCAGCATACCGGCGACACCGCACACGTTTGCAAGGTGTGCTCTAAGAACTTCACCAGGAAAGAACATCTTGTCACACACATGAGGTCGCACAGTTGTGGCGAGCGTCCATTCAGTTGCGGCGAGTGCGGCAAATCTTTCCCGTTGAAAGGCAACCTACTATTCCATGAACGATCCCATGCCAAGAACAATGCTAATGCTGCCAATAAGCCGTACCGATGTGAAGTCTGCTCCAAGGAATTCCTCTGTAAAGGTCATTTAGTGTCTCATCGACGCACACACGCGGAGTGGGCGGAAGGTGCCCCAACCGGCGAAGCACCCGCTGAAACAGAGGACTGTACTGATAATAAGTGTATCAAAGTCGAGCCAGAACGAGCTGAAAGAAAACATGAAGTCAGGACGACAGTCGAGACGAGACCAGATGAGACCAATGTCGCACAAACTCAGCCAAACACAGCTACTGTGATGATAACCAATAATCAACAAGTGCGCGCGGCGACCGTGGGCCCGGtgggcgcggcgggcgcggtgggCACGATGGGCGCGCCGCCCACGTTCGCGCCGCACCACGCCGGCGCGGGCCTGGCGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence
MIQLTVSEDGIVTVVEPAGTKLVDKEELHEAIKMPNDHTLTVHQLQQIVGQQVLDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLIVKDEKNANKIETAQFAIPTEIKDIKGIDLKSVGAMGMEGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNSEGQQQQAKVISEVEVEVEAGTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHAKRLAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTFCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFARKEHLNNHIRQHTGVTPHACSYCSKSFTRKEHLVNHIRQHTGETPFKCTFCSKSFSRKEHLNNHVNLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDTAHVCKVCSKNFTRKEHLVTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHAKNNANAANKPYRCEVCSKEFLCKGHLVSHRRTHAEWAEGAPTGEAPAETEDCTDNKCIKVEPERAERKHEVRTTVETRPDETNVAQTQPNTATVMITNNQQVRAATVGPVGAAGAVGTMGAPPTFAPHHAGAGLAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
iTF_01425308;
80% Identity
-