Pfla036204.1
Basic Information
- Insect
- Polymixis flavicincta
- Gene Symbol
- Rhobtb1
- Assembly
- GCA_949987655.1
- Location
- OX465194.1:17805688-17833176[+]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.4e-07 0.00014 23.4 0.4 5 54 258 304 255 317 0.81 2 3 1.9e-07 0.00012 23.6 0.2 46 109 393 455 385 456 0.86 3 3 3.5e-17 2.1e-14 55.0 0.1 6 108 480 581 476 583 0.92
Sequence Information
- Coding Sequence
- ATGGACAACGAGCAGCCCCACCAAGAGTTGGTAAAATGCGTGGTGGTTGGCGACACAGCAGTTGGCAAGACACGTCTCATATGTGCACGTGCATGCAACAAGCATGTATCGCTGTCACAGCTGATGACCACGCACGTGCCTACAGTGTGGGCTATCGACCAGTACCGGATATATAAAGATgttctagaaagatcttgggAAGTGGTAGACGGTGTGAATGTGTCACTTCGTCTTTGGGATACCTTTGGTGATCATGAAAAGGACAGGCGATTCGCCTATGGAAgGTCGGATGTAGTTCTGCTATGTTTCTCAATAACCAACCCTATATCTTTGAGGAATTGTGGAGCTATGTGGTATCCTGAAATAAGACGGTTCTGCCCAAATACACCGATTTTATTAGTGGGGTGTAAAAACGATCTTCGTTACATGTACAGAGACGAGACCTACTTGAATTACTGTAAAGATCGCAGCCCTTTCATAAGGGCTCCAAGAAAAAGCGACCTAGTGATGCCGGACCAAGGGCGCGCATTAGCGCACGAGTTCGGCATATACTACTACGAGACCTCCGTATTCACGTACTATGGAGTCAACGAGGTGTTTGAGAACGCCATTAGAGCTGCCTTGATAGCCAGGAGACAGCAGCGGTTCTGGATGACCAACTTGAAGCGGGTGCAGCGGCCGCTGTTACAGGCACCGTTCAGACCTCCTCGTCCATTGGAGCCCGAAGTAGCCGTCGTGAACAGCACCTATCTAGAGAATACGACCACTCTCTTGCGACAACAGTATTTCACTGACATGGTGATAATATGCGGCGCGAAAGGCTTCCGAGTGCACCGGTTTATGATGGCGGCAGCGTGCGAGGCCTTCCACCATCTGATGACCAAAGATTGCGTCAGCCATTCCACTGAGCTCGCTCGGAGTTCCAGCGAGAGCAGCATGGTAAGCAGTATGGGTGAGGCGACGGCAGGCGAGTTTAACGAGGACACTGAGTATTTGATACGGCAGGACCAGGCTAAACAGATGAgGGTGTGGGATCAGATCAAGCGACGGTCTTCATGTCAGATTCTACCTCTGACTGACAGTTGCAAAAAACCTCCAGACTTATATAGAGAGGTCAACCATCCTGCTATAATATCTATCAGAGTCGTTAAGTGCGACAAGATCCAACACGCGACATCCCAAACGCATACAATAGTGACGTTGAGCAAGTTAATCTCACCAACTGTGATGCAAGAGATCGTCAACTTCGTATACACCGGCACTATGGACAACAGCGCCTTCAAGCAGCAGGAAATCAGACAAGCCGCCGAGCTGCTTGGCATCCATGAGCTCTGCAAGTTGAGTGAGTTCATTCTGGACCAGCATTTGTTATTCGACAAGGGGTTCATGCTGCAGTTTCACACGCCTATAGCCGCCCGTCTCCGCGACATGTACTTGGAGCGCGCGTTGTTCCCGGACGTGACGTTCGACCTGGACGACGGCATCCACCTCGCGCACCGCGCCATGCTCATGGCTCGCTGCGACCCCATGAAGGCCATGTTCCAAGGACACTTTCGCGAGAGTACCTCCCGCGTGATATCATTCCCTGGTGTGAAAATGTACGCGTTCCACATCCTGCTCAGCTACATCTACAGCGACAAGATACCCGCTGTGGACCCTAACCGATGCCTGGAGGTGCTGGAGCTAGCCAACAGGCTGTGCATGAACCGCCTTGTGAACCTGGTGGAGGCCAGGGTCATAGACCAGCTGCAGCAGACAGACAGAGTGTGCGGTGACGATGACCAGGTCGTCAAGATAGCGCTTACGCTACTGGAGCCAGTTAAGGTAAGGAAAAGGAACACATAA
- Protein Sequence
- MDNEQPHQELVKCVVVGDTAVGKTRLICARACNKHVSLSQLMTTHVPTVWAIDQYRIYKDVLERSWEVVDGVNVSLRLWDTFGDHEKDRRFAYGRSDVVLLCFSITNPISLRNCGAMWYPEIRRFCPNTPILLVGCKNDLRYMYRDETYLNYCKDRSPFIRAPRKSDLVMPDQGRALAHEFGIYYYETSVFTYYGVNEVFENAIRAALIARRQQRFWMTNLKRVQRPLLQAPFRPPRPLEPEVAVVNSTYLENTTTLLRQQYFTDMVIICGAKGFRVHRFMMAAACEAFHHLMTKDCVSHSTELARSSSESSMVSSMGEATAGEFNEDTEYLIRQDQAKQMRVWDQIKRRSSCQILPLTDSCKKPPDLYREVNHPAIISIRVVKCDKIQHATSQTHTIVTLSKLISPTVMQEIVNFVYTGTMDNSAFKQQEIRQAAELLGIHELCKLSEFILDQHLLFDKGFMLQFHTPIAARLRDMYLERALFPDVTFDLDDGIHLAHRAMLMARCDPMKAMFQGHFRESTSRVISFPGVKMYAFHILLSYIYSDKIPAVDPNRCLEVLELANRLCMNRLVNLVEARVIDQLQQTDRVCGDDDQVVKIALTLLEPVKVRKRNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01363239; iTF_00924905; iTF_00784524; iTF_00122541;
- 90% Identity
- iTF_01095079; iTF_00924905; iTF_00043693; iTF_00446349; iTF_00040015; iTF_00906298; iTF_01152295; iTF_00772140; iTF_00122541; iTF_00622962;
- 80% Identity
- -