Pfla033760.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polymixis flavicincta
Gene Symbol
-
Assembly
GCA_949987655.1
Location
OX465192.1:13351123-13353576[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.3e-08 2e-05 25.6 0.0 3 45 14 55 12 55 0.90

Sequence Information

Coding Sequence
ATGCCGCCTGTAAAAGGACAAATGTTCCGTTATTCTGAAGCTGGTATGGAAGCAGCTATACAAGAATGTCGGCGAGGCGTCCCGACAGCTACTGCGGCAAAAAAATTCGGCGTACCAAGAGTTACTTTACTGAATAAAGTGAAGGGAAAGACACCTATAAAACGTAAAATGGGAAGAACCTGTTACATGACCGAAGAAATAGAAAGTATGTTGGTTACATGGGCAAAAGCAATGGTGAAACAAGGTTTTCCAATAGGTAAGGATAATTTGCTAGATAGCGTTAAGAAAATAGTAGATGATTTAAATGTAGAAACTCCTTTCAAGAATGGCAGACCTGGAAAAAGATGGTACACCAGCTTTTTAAAACGTCATCCTGATCTTATAACAAGACAGCCCCAAAACTTTACTGCTTCCAGAGCTTCTGTAACAACATCTAAGTTGAAAAATTGGTTTGAAGAAGTTAGCAGTTACTTGAATGATAATAGTTACAGTGACATTTTGAATGAACCGCAAAGAGTTTTTAATATGGATGAGACCGCTTTTTTCCTAAATCCTAAAGGAAATAAGGTCCTAGCAGCTAAAGGAGATAAATCAGTGTACCAAAAAATTAACATGGATGAAAAAGAATGCTATACTGTACTTCTAGGTGGCAATGCTGCTGGAGATGTTCTACCTCCTATGGTAATTTTTAAATATGAGAGGATACCAAGAGATTTAAGTACGTCAGTTCCTGATTCTTGGGGTATTGGGCGTTCAGATAATGGCTGGATGACCAGAGAGACCTTTTATGAGTatatatgcaatattttcaacaaATGGTTAGATGACAAGAATATTCCAAGACCAGTTCTGCTTTTTATAGATGGTCATACGTCACATCTTTCTTTCCATGTCAGCAAATTTTGTTCCGAAAATGGCATTATTTTGATTGCTCTCTTTCCGAATGCGACGCATTTACTTCAGCCAATGGATGTCGCAGTTTTTAGAAGCCTCAAGGGAGCATGGAAGACTGCAGTGCATTCTTGGCGGTTGGAAAATATTGATTCGCCTATTTTACGCAAAGCAAATTTTTGTCCTTTGTTAAACAAAGTGCTGAAGGATACATTGGTACCTGCAATATTTCAAAATGGTTTTCGTAAGTGCGGACTAACACCATGGAATCCTGACGAAGTGTGCTGTGTCCTGGAACCGCCAAACAATGAATCAGCCGATTTAACAGAATTACAGAAAATGGCGAAGATTAAGGAATTGGAacttggaaaaaagtttttagaaaAGTACATAGATACCGAAAAAATAGTTAAGTTTAAAAATTGTGATGAATGGCTTGGTGACaaagaagacgtagagttgtttaaattatacaaaaatgttGAACTATCGTTAAAAAACTTGACAAGTCAGAATTTCGTACCAGAACCTAACAGTGCATCTGTAATAATACCTCCACTTGACGGCAATGTAGACGCAACATTATACACCTTTACAGATAACCCAAAAACACCTATTAAACTGCCTGAAATAATATCTGACAACAACACAATAATATCTAACAGCGCAACTGAAATAATATCTCCACTTATGAATGACAACAATCATAATGTTACATTAGACGTCCAGGCAGAAAACTTTAAAACACCTATTAAACTAACTGTTAACAATACTTTCCAAAATCCTCACAGCATGAACATGAGTACAAACTTGATGATGCCATCCACATCAGGAATACAAGAAAAAAACTGTAGCGGTATGGGTATAATAATACCAAGTCCCTTCAAAAGAGCTTTGTTTTGGCCAACACCTAAAGAAAACTCCAAAAaaagaaggaaagaaaaaatACCCTCTGTTATATCCTCAATTCAATGGCAACAATATCATGAAAACAAggagaagaaaaaaaatgaagtagAGGAAGAGAAAAAAAGAAGATTAGaggaaagaaagaagaagaaagaacaGAACGAAAAAGCAAGAAAACTTAAGACAGCTCAAACTCTAGCTAAGAAAAACCAAAATACtgtgaaaaagaaaacttataaGACTGATTATAATAGTGACACAAGTACTGAAGAAGAATGGGTGGATTCTGGAGATAGCGTAGATGATGTATCTGACGAGTGTGAGAATGGTGTTGAAGAAAACGAATATACAAATGATGAAAATTGCCATGACAAAAGTCAAATCAAGCAAGGTGATTATGTGATCATCAACTTTCCTGGTAAAAAGAAATACCATAAGTTTGTATGCattgtacaaaaaatatcacGTAGAGATATCGAAGTTATGGCTATGGTCAGCTGTGATCAaaccaaaacaatatttaaagaaaacgaCAAAGATATTAGTATCATAAGTGAATCTCAAATCGTTGAAGTCCTCAAAGCGCCAAATATGATTATATCAGGTGATAGGATTAAGTATAAATTTGATTTTCCATTACAAGTTGATGGATAA
Protein Sequence
MPPVKGQMFRYSEAGMEAAIQECRRGVPTATAAKKFGVPRVTLLNKVKGKTPIKRKMGRTCYMTEEIESMLVTWAKAMVKQGFPIGKDNLLDSVKKIVDDLNVETPFKNGRPGKRWYTSFLKRHPDLITRQPQNFTASRASVTTSKLKNWFEEVSSYLNDNSYSDILNEPQRVFNMDETAFFLNPKGNKVLAAKGDKSVYQKINMDEKECYTVLLGGNAAGDVLPPMVIFKYERIPRDLSTSVPDSWGIGRSDNGWMTRETFYEYICNIFNKWLDDKNIPRPVLLFIDGHTSHLSFHVSKFCSENGIILIALFPNATHLLQPMDVAVFRSLKGAWKTAVHSWRLENIDSPILRKANFCPLLNKVLKDTLVPAIFQNGFRKCGLTPWNPDEVCCVLEPPNNESADLTELQKMAKIKELELGKKFLEKYIDTEKIVKFKNCDEWLGDKEDVELFKLYKNVELSLKNLTSQNFVPEPNSASVIIPPLDGNVDATLYTFTDNPKTPIKLPEIISDNNTIISNSATEIISPLMNDNNHNVTLDVQAENFKTPIKLTVNNTFQNPHSMNMSTNLMMPSTSGIQEKNCSGMGIIIPSPFKRALFWPTPKENSKKRRKEKIPSVISSIQWQQYHENKEKKKNEVEEEKKRRLEERKKKKEQNEKARKLKTAQTLAKKNQNTVKKKTYKTDYNSDTSTEEEWVDSGDSVDDVSDECENGVEENEYTNDENCHDKSQIKQGDYVIINFPGKKKYHKFVCIVQKISRRDIEVMAMVSCDQTKTIFKENDKDISIISESQIVEVLKAPNMIISGDRIKYKFDFPLQVDG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00043426;
90% Identity
iTF_00745606;
80% Identity
-