Pfla033690.1
Basic Information
- Insect
- Polymixis flavicincta
- Gene Symbol
- -
- Assembly
- GCA_949987655.1
- Location
- OX465192.1:11750687-11752402[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4e-08 1.8e-05 25.7 0.0 2 40 16 55 15 60 0.90
Sequence Information
- Coding Sequence
- ATGCCACGAACATATGTGAGAAAGTCAAATAGGCTACAGTGGTCGGAGTCAGACATGCTTTTAGCCATAAATTCAGTGCTGGAAGGCAGAATGGGATATCTTTTAGCGTCACACACATATAGTGTACCAAAAAGCTCTCTAGAAGATCGTGTAAAGAAGATCAAAGCTGGAAAATCCAAAGACGAAGTGTTTCGAAAGTGCCCTGCTACTGCAAAATGCGTCTTCACTGATGTGTTGGAAGGTATGCTAGTTGAACATATCAAAACTATGGAATCTCGACTATTTGGGTTGACTAAAACAGATCTGCGACTTTTGGCATTCCAattggctgaaaaaaataatttgaaccaTCCTTTTAATAAAGAAACTGGACTCGCTGGCTTAGATTGGGTTAGTGGATTTCTAAAACGACATTCTGAATTGTCACTAAGATTACCTGAAGCTACATCAGCTGCAAGAGCAATGGGCTTTAATAAAGCTGTAGTGTCATCGTTTTTTAATCTTTTGGATACACTTTATGCTAAGCACGCTTTCAATTCCACGCGAATTTATAACATGGACGAGACTGGATTGACCTCAGTaccaaaaaaaattgggaaaattatATCTGTCAAAGGTAAAAAACAAGTTGGTGCCCTAGCTTCAGCTGAACGAGGACAGTTGGTAACGGCAGTGCTTTGCTTTTCTGCAGCTGGACATTATGTTCCACCTCTTATGATTTTTCCTCGTGTACGAATGAAGAGTGAACTTTTGGATGGTGCACCACCAGGCACAGTAGCTGTATGCCATCCAAGTGGATGGATGCAACAACATATTTTCACTGAATGGATGCGTCACTTTATCGGCCACGTCAAACCAAGCAATGAACATCCTGTGCTTCTCGTCTTAGATGGTCACGCTACTCACACTAAGAACCTAGAAGCTATTGAGTTAGCTCGTGCTCATGGTGTCATAATGCTCTGCTTCCCTCCCCACTGCACGCATCGTTTACAGCCACTCGATGTTGGTTTTATGGGGCCTTTGAGCACGTTTTACTCGCAAGAAGTTCAATTATGGCTTCGTAATCATCCAGGGCGTGTTGTCACCCAATTTCAAATGGCATCTTTGTTTGGAACTGCTTATAATCGTGCCGCTACTATGCAAAATGCAGTGTCTGCTTTTACCAAAACCGGAATTTTCCCTCTGAATCCCAACACGTTTACAGATGCAGATTTTGCACCATCACAGACTACAGAAATATCATTTTTACCACCAAGCACTAATGAATTCTCTCAGGATCCGTTGCCGCGTGAAAGAACTCCGTCTCCGCAAGCAGGAACATCTACAGCAGGACAATCTTTTTCAGATTCTTTAAGTCTTGTATCACCGAAAGATATCATGCCGATTCCTCATTTTAAAAAGAATATGCGGCCATCGGCGCGTCGAGGAAAAACCGAAATTTTGACTGAGTCACCGTATAAAAATGAACTGGCAGTTAAGGCTATGTCAtcagtaattaaaacaaaaaaaggcaAAGGTAAAGGTATCGGTAAAAAGACGCATAAAGAAAACTATCAGGAGGATTCGGAGTGTTTGGTTTGTGGCGAAAAGTACAGTCAAACTAAGTCCACAGATGCATGGTACCAATGCACTGCTTGTCTTAAATGGGCTCACGAAAGTTGCATCAGTTGTTCTGAgcaagaattattattttttgtatgcaaAAACTGCGAATAA
- Protein Sequence
- MPRTYVRKSNRLQWSESDMLLAINSVLEGRMGYLLASHTYSVPKSSLEDRVKKIKAGKSKDEVFRKCPATAKCVFTDVLEGMLVEHIKTMESRLFGLTKTDLRLLAFQLAEKNNLNHPFNKETGLAGLDWVSGFLKRHSELSLRLPEATSAARAMGFNKAVVSSFFNLLDTLYAKHAFNSTRIYNMDETGLTSVPKKIGKIISVKGKKQVGALASAERGQLVTAVLCFSAAGHYVPPLMIFPRVRMKSELLDGAPPGTVAVCHPSGWMQQHIFTEWMRHFIGHVKPSNEHPVLLVLDGHATHTKNLEAIELARAHGVIMLCFPPHCTHRLQPLDVGFMGPLSTFYSQEVQLWLRNHPGRVVTQFQMASLFGTAYNRAATMQNAVSAFTKTGIFPLNPNTFTDADFAPSQTTEISFLPPSTNEFSQDPLPRERTPSPQAGTSTAGQSFSDSLSLVSPKDIMPIPHFKKNMRPSARRGKTEILTESPYKNELAVKAMSSVIKTKKGKGKGIGKKTHKENYQEDSECLVCGEKYSQTKSTDAWYQCTACLKWAHESCISCSEQELLFFVCKNCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00445082; iTF_00147363; iTF_00237513; iTF_01171404; iTF_01171405; iTF_01026101; iTF_01026103; iTF_00147364; iTF_01085124; iTF_00850661; iTF_00040747; iTF_01026093; iTF_01157651; iTF_00758102; iTF_01531959; iTF_00445081; iTF_01026107; iTF_00172796; iTF_01093029; iTF_01153867; iTF_01026095; iTF_01076410; iTF_01155066; iTF_00302046; iTF_00302045; iTF_00261785; iTF_01152968; iTF_00290623;
- 90% Identity
- iTF_01076410;
- 80% Identity
- -