Porl013075.1
Basic Information
- Insect
- Parnassius orleans
- Gene Symbol
- -
- Assembly
- GCA_029286625.1
- Location
- JAGSMP010000033.1:4840187-4841626[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-08 9.2e-06 27.3 0.0 2 43 16 58 15 60 0.91 2 2 8.1 4.6e+03 -0.6 0.0 19 31 363 375 358 375 0.79
Sequence Information
- Coding Sequence
- ATGCCACGAAAATATGTGAGAAAGTCAAATAGGCTTCAATGGTCGGAGTCAGATATGCTTTTAGCCATAAATTCGGTGATAGAAGGTAGAATGGGATATCTTTTAGCGTCAAACACATACAATGTACCCAAAAGTTCGATAGAAGATCGTGTAAAGAAGATCAAAAATGGAAAATCCAAATATGAAGTGTTTCGAAAGTGCCCTGCTACTGAAAAGTGCGTCTTCACTGATGAGCTGGAAGGTATGCTAGTCGAACATATTAAAACTATGGAATCTCGACTATTTGGATTGACTAAAACAGACCTGCGACGTTTGGCATTCCAATTAGctgaaagaaataatttaaaccatcCTTTTAATAAAGAAACTGGACTTGCTGGCTTAGATTGGGTTAGTGGATTTCTAAAACGACATTCTGAATTATCGCTAAGATCACCTGAAGCAACATCAGCTGCAAGAGCAATGGGATTTAATAGGTCTGTAGTAACgtcattttttaatcttttagaAACACTTTATGTTAAGCACGCTTTCAATTCCACGCGAATTTATAACATGGACGAGACTGGATTGACCTCTGTACCaaaaaaaataggaaaaatTGTGTCGGTGAAAGGTAAAAAACAAGTTGGTGCACTAGCTTCGGCTGAACGGGGCCAGTTGGTAACGGCAGTGCTTTGCTTTTCTGCAGCTGGACATTATGTTCCACCGCTTATGATTTTTCCTCGAGCACGAATGAAGAGTGAGCTTTTGGATGGTGCACCACCAGGTACAGTAGCTGTATGCCATCCAAGTGGATGGATGCAACAACATATTTTCGCCGAATCGATGCGTCACTTTATCGGCTATGTTAAACCAAGCAAAGAAGATCCTGTGCTTCTTGTCTTAGATGGTCACGCCACCCACACTAAGAACCTAGAAGCTATTGAGTTAGCTCGTGCTCATGGTGTCGTAATGCTCTGCTTGCCACCTTACTGCACGCATCGCTTACAACCACTCGATGTTGGTTTTATGGGGCCTTTGAGCACGTTTTACTCGCAAGAAGTCCAGTTATGGCTTCGAAATCATCCGGGGCGTGTTGTCACTCAATTTCAAATGGCATCTTTGTTTGGAATTGCTTATAATCGTGCCGCTACCATGCAAAATGCAGTGTATGCTTTCTCAAAAACCGGAATTTGCCCACTGaatcccaatatttttacagatgtcgATTTTGCACCATCACAGACTACAGAAATATCATTTGTACCAACCACAAATGAAATCTCTCAGGATCCATTGCCTCGAGAAGAACTCCGTCCCCGCAAGCAGGAACATCTACAGAAGGACAAACGTTTTCAAATTCTATTAGTCTTGTATCACCAAAAGATATCATGCCAATTCCTCATTTTAAAAAGAACATGCGTCCATCATTACGTCGAGGAAAAACCGCAATTTTGA
- Protein Sequence
- MPRKYVRKSNRLQWSESDMLLAINSVIEGRMGYLLASNTYNVPKSSIEDRVKKIKNGKSKYEVFRKCPATEKCVFTDELEGMLVEHIKTMESRLFGLTKTDLRRLAFQLAERNNLNHPFNKETGLAGLDWVSGFLKRHSELSLRSPEATSAARAMGFNRSVVTSFFNLLETLYVKHAFNSTRIYNMDETGLTSVPKKIGKIVSVKGKKQVGALASAERGQLVTAVLCFSAAGHYVPPLMIFPRARMKSELLDGAPPGTVAVCHPSGWMQQHIFAESMRHFIGYVKPSKEDPVLLVLDGHATHTKNLEAIELARAHGVVMLCLPPYCTHRLQPLDVGFMGPLSTFYSQEVQLWLRNHPGRVVTQFQMASLFGIAYNRAATMQNAVYAFSKTGICPLNPNIFTDVDFAPSQTTEISFVPTTNEISQDPLPREELRPRKQEHLQKDKRFQILLVLYHQKISCQFLILKRTCVHHYVEEKPQF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01246814;
- 90% Identity
- iTF_01155066;
- 80% Identity
- -