Pfla041575.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polymixis flavicincta
Gene Symbol
-
Assembly
GCA_949987655.1
Location
OX465200.1:12358612-12390222[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7e-09 3.2e-06 28.1 0.1 4 40 213 249 212 253 0.92

Sequence Information

Coding Sequence
ATGAAGGAAGTTAACATAAACATAGAAGGCTATAATGTTAACGGGATATGTGTCGGCTGTTTGAACTATAATCGTCGAATGTATTACCACCCCTCGGTAAAAGAATGTTTTCGTTTGCTTGGAAATATCGATGTGCCAGATGGTCTGGAAGTGCAAGTGTGTTGGGAATGCCTGGCGCGCGTCAATTCTGCTATCAAATTCAGGGAACAGATGCTAAGGTCTTATGAATTCCTTATCTCGTACTCTAAGGAGCACACATTCCTTGACTCCCCAAATGATTTTGAACCTCACGCCACCATCAACATATATAGGACAGCAGTGGAGTGTTACGAGAGTGTACCTAAAGTGGAACCGGAGGAGGTTGAGATCGATGTGGATGTTAAAGAGGAGGAGGAGATTGAGGCTAAGTATCCTATCGGGGTGGCAATAAAAGAAGAAACGTTTGAGGACCCATACTTCCAAGATTTGCCTGCTGTTGACAATGATATCACTTCTGATGAAGACGTGCAGCTTTCTAAACTTAAAGAGAAAGAAACGGAGAAAGGgaagaagaagagaaagaaggaACGGGAGAGAGAACGGATGCCAGCCAACAAGCGGCCGAGAAAGACGACACGAGGTCTCTCAGACATATCGCAGTTTGAAGCTGCATACGATCAAATTGTCAATCACGGAGTGTCCGTACGACAAGCGGCTAAAATGTACAACGTTACACACGTCACCCTCCAAAGATACAAGAAAAGGCGTCAAAACACAAACTTCCCCGTCAAAGTCGGGTATGCACGTAACAACTTTTATACAACGGCACAAGAAGCAGTATTGACGAAATACTTAAACAAATACGCGGACATATATCCCGGGTTATGCGTAAAAATTGTCAGGAAGTATGCGACGGAATTCAGTCAGAAACTGGGTTTGAAGACTCCGAAGCCTTGGGTTGACAATGAAATGGCTGGCGTCGACTGGTACAAGAATTTCATGTGCAGAAATAAAGTGTTAGAAGATAAAATTGATCGGCAAACGGCTAAAGAAAACGTTCGACGGTTTTATGATCGGCTGTGGAGTATCATGTGCCAATATAATTTTGGCtcagaaaacatttattctttAGACGAAATTGGGGTTAATATTGAAGAGTTTAGAGATAAAATTTGGCTGATGACGACGAAGAATGGCCCCATAGCTTTGAAAGAGTCTAAAGTTAGATTCATTTATGCAGCGAACGCGAAAGGCTATGCTATGCcccctttatttttattgccgCAAAAGGAAAAAAAGGAAGATATTCCGAAAAACAACACTGAAGTCAAAATTGAAAAAGATTTGGAAGACTACCCAAAGCGCCAGAAGACTAAGAAGGAAAAGGACCCCGCCAAGAAGAGTAGGAAGCTAAAGAATCTGCCAGAAGAGTTGGTAGAACTGTACACTATGAGTAAAGAACAGATGTGGGCTATAAGGGTTGAGGATTTGAATAGCAGGGAATTTCAGAAGCTTAAGTATAGGTGTGACAATTGTATTATTGCTTTTAATACTGAAAAGTTGATGCATGATCATCTAAATGGAAAACACCAACCGaaaagcgAAGACTGCCATCAATGCTCAATCTGCCAGGCCTACTTCCTAACTAAAGACAACGTGGCCGCGCACAAAGCGTTACATCAACAAGGTTATATGTGTCGGGAGTGTGGATTCAACACTACGCTCAAACGACGTATGTTGAAACATGTTGGGAGTCACGCGCCGAGCGGGGCTGCTCATGTGTGCCAGACTTGCGGGGGTAGCTTTAGCACAAAATCGAAGCTAACATACCACCGCGGCGTGTGTTGTCAAGAAAGGCCACAGTGCGACTGTTGTGGCAAAGTATTCGCCAACAAAATGACGCTCAAGTACCACCTCAAAATTCTGCCACAGAATAAAGATGATAAGCCCAAGGAAAAATTGTTCATACCGTGCAAGGGATGTGATAAAGTGTTCCATTCTAAGAAGAGTTATAGGGCTCATGTTGTGATCCACGACGGCCTCACATACCCCTGCCCAACCTGCGGCAAGCTGTTCCAGTGGAAGCGCAACCTGGCGCGGCACGCGCGCAACCACCGCGAGCGCCAGGCCGGCAACCTGAACGAGTGCCGCGCCTGCGGGAAGACCTTCGCCAGCAGGGACTGCTACAACAACCACATGCGGCTCAGCAAGAAGCACGTGTCGCAGGATTCCTACCCACACGAATGTAACTACTGCGGAAAGAAATTCCCCACAAAATGGTGCCTTACCGACCACATTGACTGGGATCACTTGAAGAAAATCAAATACCAATgcagtttttgttttaagGCTTTTAAGACAGCTAAAATATTGGTGGCTCACGTCAACAATATACATGAGGGTAAGAAGAAAGAAGCCGAGGGTGAACATCTGTGTGAGATATGCGGGAAATCATATAGGACAGTAAAACGCCTTAAGGGCCACGTATGGGCGATGCACACAAAACGGTCGAACAGCAAGATATACAAATGTAAGCTATGTCCGGCGACCTTCATGTGGCAGACTAGCATATACAAGCATATGAAGATGATGCACGAAAGTAACAAGAAGAGTAAGCAAACATTGCGCGGTGTTCAGCCTATGAAGAAAGAAGAGCCCTACCCAGAAATCGAACTAGCGAACTGCATGCAGTATTTCCAACAAAACATAGGAGGCAGCTTAAACATAGTACATATACAGCCTTTGGGAATGACTCAAAATATTGTTTAG
Protein Sequence
MKEVNINIEGYNVNGICVGCLNYNRRMYYHPSVKECFRLLGNIDVPDGLEVQVCWECLARVNSAIKFREQMLRSYEFLISYSKEHTFLDSPNDFEPHATINIYRTAVECYESVPKVEPEEVEIDVDVKEEEEIEAKYPIGVAIKEETFEDPYFQDLPAVDNDITSDEDVQLSKLKEKETEKGKKKRKKERERERMPANKRPRKTTRGLSDISQFEAAYDQIVNHGVSVRQAAKMYNVTHVTLQRYKKRRQNTNFPVKVGYARNNFYTTAQEAVLTKYLNKYADIYPGLCVKIVRKYATEFSQKLGLKTPKPWVDNEMAGVDWYKNFMCRNKVLEDKIDRQTAKENVRRFYDRLWSIMCQYNFGSENIYSLDEIGVNIEEFRDKIWLMTTKNGPIALKESKVRFIYAANAKGYAMPPLFLLPQKEKKEDIPKNNTEVKIEKDLEDYPKRQKTKKEKDPAKKSRKLKNLPEELVELYTMSKEQMWAIRVEDLNSREFQKLKYRCDNCIIAFNTEKLMHDHLNGKHQPKSEDCHQCSICQAYFLTKDNVAAHKALHQQGYMCRECGFNTTLKRRMLKHVGSHAPSGAAHVCQTCGGSFSTKSKLTYHRGVCCQERPQCDCCGKVFANKMTLKYHLKILPQNKDDKPKEKLFIPCKGCDKVFHSKKSYRAHVVIHDGLTYPCPTCGKLFQWKRNLARHARNHRERQAGNLNECRACGKTFASRDCYNNHMRLSKKHVSQDSYPHECNYCGKKFPTKWCLTDHIDWDHLKKIKYQCSFCFKAFKTAKILVAHVNNIHEGKKKEAEGEHLCEICGKSYRTVKRLKGHVWAMHTKRSNSKIYKCKLCPATFMWQTSIYKHMKMMHESNKKSKQTLRGVQPMKKEEPYPEIELANCMQYFQQNIGGSLNIVHIQPLGMTQNIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01441431;
90% Identity
iTF_01247516;
80% Identity
iTF_01247516;