Pcas010738.1
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- -
- Assembly
- GCA_038024825.1
- Location
- CP149051.1:9347359-9354694[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.012 0.68 10.9 1.0 3 23 206 227 205 227 0.96 2 23 0.29 16 6.5 0.2 1 21 608 628 608 629 0.96 3 23 6.6 3.7e+02 2.3 0.3 1 22 670 691 670 693 0.82 4 23 0.0048 0.27 12.2 1.1 2 22 703 723 702 723 0.94 5 23 2 1.2e+02 3.9 0.4 2 23 731 753 730 753 0.90 6 23 0.037 2.1 9.4 0.3 3 23 775 796 774 796 0.97 7 23 0.0054 0.31 12.0 2.3 1 23 802 825 802 825 0.92 8 23 0.12 7 7.7 0.0 1 23 851 874 851 874 0.90 9 23 0.018 1 10.3 3.4 1 23 879 901 879 901 0.97 10 23 0.019 1.1 10.3 0.3 1 23 907 930 907 930 0.95 11 23 0.0023 0.13 13.2 1.3 1 23 943 965 943 965 0.97 12 23 0.0014 0.08 13.8 4.0 1 23 1016 1039 1016 1039 0.96 13 23 0.0047 0.27 12.2 1.7 1 23 1102 1125 1102 1125 0.96 14 23 0.0011 0.061 14.2 2.1 2 23 1151 1173 1150 1173 0.95 15 23 0.085 4.8 8.2 0.1 2 23 1179 1201 1178 1201 0.93 16 23 0.0097 0.55 11.2 0.2 1 21 1245 1265 1245 1266 0.95 17 23 0.0012 0.068 14.0 0.6 1 23 1276 1298 1276 1298 0.93 18 23 0.00011 0.0062 17.3 0.3 2 23 1391 1413 1391 1413 0.93 19 23 3.2e-07 1.8e-05 25.3 1.4 3 23 1420 1440 1419 1440 0.98 20 23 0.0011 0.064 14.1 0.4 1 23 1458 1480 1458 1481 0.95 21 23 0.18 10 7.2 0.0 1 23 1503 1525 1503 1525 0.97 22 23 0.027 1.5 9.8 0.6 1 23 1531 1554 1531 1554 0.95 23 23 0.00031 0.017 15.9 0.7 1 23 1562 1585 1562 1585 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGACATCTCGAGGCGAATTAGTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAGCCTCATGTCCTCGCATCGAAAATCAAGGATTGTGTGTCCGTTCAGATAAACGAGAATGACGACCTGCCAACCAATGCCTGCAGGAAATGTGTAGACAATGTCAATAACTGGCACATATTTAAGACTGTATGTGAAAGGACACAAAACAAACTACAGTCTCTGAGTAATAAAGATGGCAGCCAACTAGAAGAGGTGAAAATAAAGAGTGAACCATTATCAGATGAGGCCTATCATGATGGAGTGGTTATTGATGGCCATTACTCAGAAGAGGCTGCGGCAAGTACCAGTAAAGTGCAACCTGAGGGCCCACCAATCCTGGCATCGTTGGGGCTCACACCACGAAGTGATAAGGGTATTGAAAGTGAGAAAGATGAGGAAGAAGACGAAGATGAAGAGATGAATGAATCAGCCCAGTATGCTAAAGTGCCCGCTATGCCCGAAGTGTCCATCACAGTGATGCGTCCTACCGGGGAGACATTACATGCTCGGCAAGGAATCCAACAGTTAGCTTCCAAGGACTGTCTCGTTTGCGGCCGCGCTTACAGGTACTCTCACAATGCCAGGCGACATGAACTAACATCCCATAGTTTCGACAGATATACGAACAAAATAACGGCCAAGAAGTCCAAATCGCATATGCAACCGAAACTCAGACTTAACCCGTTTAATCCCAAAGCTCGACTTATGCCAAACCCCATTAGTCACAAAATGCAAATTCCGAAACCAATGCCAACTAGAATTATGCCATCGAGAGTGGTGAGTCAACCAAAACcgatacctattaaaaattcaaaaccatctcaaaataatttaccaTATCCTTTACGTATAAAAGCTCTGAAAGacttgcaaattaaaaaaaaggagcCACAGATTTTGAAAACATTGTTGACTTCCAAACCAGAGCTTTTAGTATCTGAACCTGAGATAATTAATTCTGGCCCAGAAAGTCCAGAAACTCTTATATCTGAACCTGAAATTGCATCTTTCCAAGTTGAAACCATTTTGTCGGAGCCTGGTTACGAAAATCAAGATGAAGAGGAAGGTGATGAATCCAATCAAAATCAACATTATGATACGGTTGATATGGAATCAGATAATGAAATTGAGATCGCGCGTCAGCAGGAAAATGATGAAGAAATTGAGGACGCTCAAGAGGATAATAATGCCGAATCCATTTTACCACATGACGATGATCAAATTGATAACATGGAAGGTGATGTCAGTGATGAAAACGGACATAATGAGGAGGAAGACGAAAATGGCGAAGTTAAGGCAGAAATGACTATTGAAGAAGATCACAATGATGAAGGTCTAGAGGAAGAAGGCGAAAAAGAATTAGAAGACGACAATGTCGAGGCATGCGATGATGACCAAGAAGCCAATGATGAAAATGAAGAAGATGAAGAAGAGCTTCCACCTTTAGGTTTAGCCCCTGTTGTAGAAATTAACGAAGACATGCAAACTAATTCAAACAACAGTGAGCAAAATGAAgaggaagaagaagaaatgGACGAGACAGTCGGAAATGACACCGTCGAAGACGTCAAAGAACTGGACCCTGATAAGGTTTATGTTACGAAGACTCAAAGAGATTTCATAACAAAGTATAGGGATATTATTCAACAGATAAATACTAAACGATGCCTCTGCTGTGATAAAGAACATCCTCGTCGTAAAGCTGTTATTCAGCATTTACAGAAAAACGGACATAAAGTTCCAAAACATACATGTTACAACTGCGTAATAACTTTTGGCCACATCGGCGCGTTGCTTAGTCACATGAGAGCAAACGTTTGTACCGATTTGTGGAAAGTGATATACAATGAAAATGGAACCGATGATTTGGTTATCGGTAACGCGCGTAAAGGTAATAAAGTGCAGTACAAGGATATTTTCAATGCTAGATCGTATGCGTGTAAACTGTGCCCAGCTAAGTTCCAGTTGAAacaatttataatgaaacacgTTCTCGACGTTCATGAAGATGGACAGTCGAGAGTTCCGTTAACTTGTGTTCACTGCTCATCACGGTTTAAGGATAAAAGTTTATGGAAGAAACACATACGCGTCGGAGAATGTACAGTATACATTTCATGCGATTTATGCTCTGAAAAATTCATGCACGTGCAAGACTTTAACGATCACGCGCTACTCGTGCACGCCGGGAGCTTCGACCAAGACAGCCAGAGCCAAAGCAAATGTGTCGACGGCCGACCCAAAGACTGTCCTCTTTGTGGTAAGAAAAACAGTAACTACCTGAACTTAGTCAAGCATCTTAAATCTGCTCATAATGAAGATAAACCGCATTATTGCAAGCATTGCGATGCTAAGTTCGAGCAAACTCCTGATTTGAACAAGCACATTTATGCTGAGCATTCCGACAAAGTACTCGGAGCGCAACCCTCGGAGCCAGACATGAGTCTTGTGAAAGAAGAAGCGGAGGAGTATCATTACTCGTGCACAGAATGTAATGCTATTTTCGAAACTGTGGATGCTTGGACGGACCACCAGGTAGCGGAACATAATCAAGTCGCACATCACTGCGACCAGTGTGAGAAAAAGTTCTTGCGGCCTTCGGAACTAGCAGAACACAAAAACACTCATTTGCGAGTCAAATTTTATCCCTGTAGCGTTTGTTCTAACTCATACAGCACTCCTCAAAAATTGTCTGAACATGTACAACAGACCCACCCGGGCGCCGCCGCGATGGCAGCTGCCGATTCCGAATTCTTCTGCGATATTTGCATTCGATCGTTTAAGAGTCGTCAAGCTTATTCTAATCATATGCGTATACATGCCAAAGTGCCTACTACTAACAGGAAACCGGGAGACACGGGGCCCAAAGGATTTTCACCGCAAATAATCGGAAAACCCATCAAACAATTCCCAGGGCTGCAGGCCGGGTTCCTTTCATTCAAGCCAAATTGTAACGTTCCTAATGCGCCTTATTGCTGTGACATCTGTGGAAAAGGTTTTAtgcataagaaaaatatatggaAACATAAAAAGGTATTGCATGCAGATCTCTTAAATGAGAGGAATGATAGTGAAGAGAATACTATGCATGCAGGGTCGACAGAGGAGGAGGAGTACAACGTCGATGAAAATGGCACTGCTCTGTCCACACCACAGTTTAACAGTTTCAATTTCGCCAACATCACTAATAATGTACAAGCACCAGCGGCGCAGATAGATGCATTGCCCTACTCTTGTGAGCTCTGTTTCAAACGGTTTCCGCTTCGAACTAGTTTGTGGAAGCATAAACGCGCCAAACACGGCATCATCAACGCCAGTGCGTCGGGTAACCCTGAAAATCAAGCGCAACAGTCAACGTCAGAAGGCGGTAGATCTAGCTGCACTATTTGCAAAATCACTTTCTCCGACAAAAAGTCATACTATCGTCATAGAAAGAATGTTCATAAGTCTACAGCTCAAATGTGTAAGATTTGTGGTAAACCGCTGAATTCCACTTTAGAATTGTACGAGCATTTGAAAGCTGCTCACGCCCGCGAATTACTTGGCTACAACGCCAATCAAGGCAGCAGTAAGACGCAGGACGTGTCGCAAGATATGGACATGGAATACGAGGCGGAAGCCGAAGTGGCGGACCCCAGTGCGGAATATCAAGCTCACTACCCGTGCGATACTTGTGGCAAGCAATTTGTTGGATTACTGGCTTTGCAAAACCATCAATGTATAAATCAAACACAATCCGAACCGCAGACTTTCGATTGCGAAATATGTCACAAGAGCTACACATCCATAGCGGCATTGAAAAGTCATCGCGGTTGGCATTTACGTTCGCCTGACGGCAAGGCGGCCGCTAACAACAGCGGTTTATGGATGCCGCAGCATAAAGTAACAAGTAAAGTTAGTAAACATGAGGTCGTCGACCCGGTACAACTGGCACGTGTGACTCATTCGACCCCCGCCACCGCAACGACGACCTCCAAGAGGAGACTACCTCCAGAAGTGGAAGTCACGGTAGTCAATCCTAACAAGAAACTTAGATCGGACGACTCGATGGAATTGGATCACCAAAACAGTCTCACTGGTCCCCTCGAAGATAGATACTGTACGATATGCGACAAAGAATTCACGAAACGTGCGGCTTACCAACGTCACATGGACGAAGTGCATCAACCAAATTCCGTGTTCTGTCCCGTCTGCGATAAGAGCTTTACTAGGAAATCAACTCTATTGGTGCATATGAAGAAGCATTACGGCGGAGAAGGGAGTTCCAGTACGACGGGTCATGTCGAAGACGACGTTTACGCTTGCGACGTGTGCGGTACTCAGTACAATAACGAGAATGCTTTGAGGGCGCACAGAGCTCGGCACCACGGGGAGGAGGAGGAAGAGGAGTCTGAAGACGAGGGTAACGTGCCAGTAGCGCAGCCGGGAGAGTTCACTTGCGCGCAGTGCGGTGACGGCGTGGCGACACCACGCGACCTGATAGCCCATAGGACCATGCATGCCACTCCTACTAAATTCTTCTGCAATATCTGCAAGGTATACTTCGCCCGGGCTCTAGACCTCTCGTCCCACACTCGGGCGAGGCACTCTGACAACGAGAAAGTGTTTTTCCCATGTGCCATGTGTGACCGGTTCTATATGAACAAGAAGAGTTTACAGCGACACATAGAGATGTCGCACTGA
- Protein Sequence
- MSVNYDRVCRLCLTSRGELVPIFPTTSSDDSEPHVLASKIKDCVSVQINENDDLPTNACRKCVDNVNNWHIFKTVCERTQNKLQSLSNKDGSQLEEVKIKSEPLSDEAYHDGVVIDGHYSEEAAASTSKVQPEGPPILASLGLTPRSDKGIESEKDEEEDEDEEMNESAQYAKVPAMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRAYRYSHNARRHELTSHSFDRYTNKITAKKSKSHMQPKLRLNPFNPKARLMPNPISHKMQIPKPMPTRIMPSRVVSQPKPIPIKNSKPSQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPELLVSEPEIINSGPESPETLISEPEIASFQVETILSEPGYENQDEEEGDESNQNQHYDTVDMESDNEIEIARQQENDEEIEDAQEDNNAESILPHDDDQIDNMEGDVSDENGHNEEEDENGEVKAEMTIEEDHNDEGLEEEGEKELEDDNVEACDDDQEANDENEEDEEELPPLGLAPVVEINEDMQTNSNNSEQNEEEEEEMDETVGNDTVEDVKELDPDKVYVTKTQRDFITKYRDIIQQINTKRCLCCDKEHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRANVCTDLWKVIYNENGTDDLVIGNARKGNKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPLTCVHCSSRFKDKSLWKKHIRVGECTVYISCDLCSEKFMHVQDFNDHALLVHAGSFDQDSQSQSKCVDGRPKDCPLCGKKNSNYLNLVKHLKSAHNEDKPHYCKHCDAKFEQTPDLNKHIYAEHSDKVLGAQPSEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQTHPGAAAMAAADSEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDTGPKGFSPQIIGKPIKQFPGLQAGFLSFKPNCNVPNAPYCCDICGKGFMHKKNIWKHKKVLHADLLNERNDSEENTMHAGSTEEEEYNVDENGTALSTPQFNSFNFANITNNVQAPAAQIDALPYSCELCFKRFPLRTSLWKHKRAKHGIINASASGNPENQAQQSTSEGGRSSCTICKITFSDKKSYYRHRKNVHKSTAQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGSSKTQDVSQDMDMEYEAEAEVADPSAEYQAHYPCDTCGKQFVGLLALQNHQCINQTQSEPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPVQLARVTHSTPATATTTSKRRLPPEVEVTVVNPNKKLRSDDSMELDHQNSLTGPLEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYGGEGSSSTTGHVEDDVYACDVCGTQYNNENALRAHRARHHGEEEEEESEDEGNVPVAQPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00010410;
- 90% Identity
- -
- 80% Identity
- -