Pcas021357.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polylopha cassiicola
Gene Symbol
-
Assembly
GCA_038024825.1
Location
CP149065.1:4254053-4262544[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.0058 0.33 11.9 4.3 1 23 255 278 255 278 0.93
2 26 0.043 2.4 9.2 0.2 3 23 308 329 306 329 0.96
3 26 0.025 1.4 9.9 1.0 1 23 354 376 354 376 0.98
4 26 1 58 4.8 1.3 1 23 380 402 380 402 0.84
5 26 1.1 63 4.7 3.0 1 23 406 429 406 429 0.92
6 26 1.4 80 4.4 7.8 2 23 436 458 435 458 0.91
7 26 0.0028 0.16 12.9 0.7 1 23 465 488 465 488 0.95
8 26 0.00012 0.0066 17.2 2.6 1 23 494 516 494 516 0.98
9 26 5.4e-06 0.00031 21.4 2.7 1 23 522 544 522 544 0.98
10 26 1.4e-05 0.00078 20.2 0.6 1 23 550 573 550 573 0.98
11 26 0.092 5.2 8.1 0.9 1 23 614 636 614 636 0.96
12 26 0.082 4.7 8.3 0.0 2 23 665 687 664 687 0.94
13 26 0.032 1.8 9.6 0.3 2 23 708 730 707 730 0.93
14 26 0.00061 0.035 15.0 2.6 2 23 736 758 735 758 0.95
15 26 0.0069 0.39 11.7 1.1 1 23 763 786 763 786 0.96
16 26 1.3 74 4.5 0.1 2 23 789 811 788 811 0.95
17 26 0.02 1.2 10.2 1.6 2 22 818 838 817 838 0.94
18 26 0.061 3.5 8.7 0.8 1 23 899 922 899 922 0.89
19 26 3.9 2.2e+02 3.0 0.1 3 23 951 972 949 972 0.92
20 26 0.14 8.1 7.5 0.2 3 23 996 1018 994 1018 0.94
21 26 0.001 0.057 14.3 0.6 3 20 1025 1042 1023 1046 0.90
22 26 0.016 0.92 10.5 0.4 1 23 1051 1074 1051 1074 0.97
23 26 0.00026 0.015 16.1 0.4 2 23 1080 1102 1080 1102 0.94
24 26 7.5e-05 0.0043 17.8 4.7 1 23 1106 1129 1106 1129 0.97
25 26 0.00032 0.018 15.8 0.6 2 23 1136 1157 1135 1157 0.96
26 26 0.013 0.76 10.8 2.8 1 23 1163 1185 1163 1185 0.97

Sequence Information

Coding Sequence
ATGGAATTCGACGAAATCGTTGTAAAAGAGAGCCCTGGCCTCTGCCGGTGCTGTCTGTCAGAAGGATGTTACAAAGACTTGGGTTCGGAGTATAGTTGGATGAGTGAAACTGAAATATACGCTGAAATGTTGTTAGAATGTTTTGATATTAgcATATCGGAGCACCCCACAGGGCCGAATGGATCAAACCGTCTCATCTGCGAGGTCTGCATCACGAGACTGCGAGATGCCTGCAACTTCAAGAAGCAGGTGCTCGAGTCGGAGAAGAAATTTGTTGACCTCGTCGCCAAGGGGGAATTTAGACCAAAAGTACTGCTGTACCAGTCTCAGATGAAGTCGGAGATCAACCTGGAGTTTGATGACGAGACGGGAGCTGATGACGGGGAGGTGGAGTACCTCGAGGAGGAGGTGGACTTTGTGGACGAGGAGCTCCTCAAAGCCGAGGGCATGCCTTCAGCCTCTGCCTCCGAGGACATCACCGTCTCCGCCCTGCCCGTGAAGGGCAAGCGCGGCCGCCCCAGGAAGACGCCCGCCCCCGCTCTCAAGCCGGAGAGGAAGGCAAAGGTGCCGAAACTAGAGGACAAACCGAAGACCTCCAAAGCCGTAGCGAAAGGTGAAAATCGCCCATCGGCGATGGCGATGGAAAAACCAACAAATTGGTCACAATTATCAGCCACAAAACGGAATCGACTCATGAAGAGTAACGCTATAGTTGTTCTAGAATCGTCCACAGTGATACCTTTTAAGTGGCAACGGCAGAACTACCTCTGTTTCTTTTGCCACAAGCCTTTTAAAAAGACGGATTTGCTCAAAAAGCACACGAGAGACGAACACACAGAGACTAAGAAGTCTAACATAAAAGCGGCCGTCACGTACCTCAGGCGGGACGAGAAAGTGAAAATTGACGTGTCTGTGATCGACTGTCGCGTCTGCGGCGAGAAGTTAAATAATCTAAACTCACTCTTAACTCATCTTAGCACTTTACACGATAAATCTTTTACGGAACAGTCCGGTAACTTCGGCTTGATACCTTATAAACTCGAGAGCGATCCCAACGTCTTCCAATGCGCTCTCTGTCAAGAGAAATTCCagtattttatcaaattaaacgAGCATATGAACTTACATTTCGGTACTTACATTTGCGACTTATGCGGCAAAGGGTTTCTGAGTCAGAATAGGCTTCGCTGTCACGTTTTGAGCCACGGCTCGGGCTTCCGCTGCAGTCTCTGTACGGAAACCTTCGATTCTCTAACTCTAAAATCTAATCACGAGTGCAAAGTTCACAAAAAGGCGAAACTGTGCAAGTGTTTCTATTGCGATGAGACGTTTCCGAATTACACGCTTAGAAAGAGACATCATCATTTAGAGCATAATATCGAAATGCCCGGGTACAACTGTCCGATCTGCCATAAGACTTTTGAGATAGAAAGCAAGATGCAGGGTCATTTGAAGGAGGTTCACATAAGAGAGAAGAATTTCTCGTGCTACGTGTGCGATCAGCAATTCTTCTCGAAGACTCAGCTGCAGAAGCATATGATTAAGCATTTCGGTGAGAGAGTTCATCAGTGCGAGGTCTGCAAGAAGTCCTACGCTCGGAAGCAGACGTTGAGAGATCACATGCGGATACATAGCGACGATAAGCGCTACGTGTGCTCTCTGTGCAGTCAGAGCTTCGTTCAGAACAACGGCCTGAGACAGCATATGAGGGTGCGCCATCCGGAATATGTAAAACCGCGGAAATACAAAGGCTGTGAATCGTCGTCGATGCGCAGACGGAGAAACCTCCAAATATTGTTCAACAGCACCACGATAATACCGTTTAAATGGCGCGGCAAATATCTCTGTTTTTACTGCAGTAAAGACATTTCCGAATACGCGGCCCTCAGGAAACACACCAAGTCGCACGGCGACTGTTCCACTCTCGATCATTCTCTAAAAGTCCTCAAAGGAGGTCAAAACATGGAAATTAAAATAGACGTCTCCGATATAACTTGTGAAATCTGTAGCGAACCTTTTCCATCTTTTGATGATATTATCAATCATCTATACGTAAAACATAAGCTAGAATACGATAGGGGTGTAGAGATGGCCATAGAGGAGTATCGATTAGTAGATCTCAATTGTCTAGTCTGTGATGAGAAATTCACGTATTTCGGGTACTTGGTCTCTCACGTGAACAACAACCATCCTAAGAATTGTTTAATATGCGATAAGTGTAACCAAAAGTTCAATAAGAAGCGAGATCTGTTCTCCCACATGAAAAACTATCATAGGGAAGGCGGTTATCAGTGCGAGATGTGTCCGCAAAATTTTAGTTCTCTAAATATTCTTCGGAAACATAGGAATAATCGTCATTTGACGAGATGCAATGTTTGTCAGCTGAAACTGCCGTCAGCAGCGTTGAAACTGAAGCATATGGAGATTGAACACCCCGACGATGGCTCTTTGCAATGTGACAATTGTTTTAAAGAATTCCATACTAAACAGGGTCTCAGAATGCACGTGAGAAAGTGCAAGGGGGAAGGGGACCTGTACGAAATCGAAGTGAGAAAGAAAGACTACGATCCCATGGATTTGGATGAAAATTACGAAGATCCCGTCAAAAGACCGAGCGTCAAACAAATTAGGGAGAACATAGTGATTGTCATAAATATGTCCACAGCTATACCGTTTAACTTCTATAAGAATAAGTTTAACTGTTTCTATTGTTCCAAAGATTTCCAAGATTCCGATTTGATGCGAGAACACACTGTCCTCGAGCACCcgctgtgtgacgtcacacagaaGTGTATTAGGAAGTGTAGAGAGAGCGTCGCTTGCGTCAAAATTGACATATCTTCCTTAGCTTGTAAGATTTGTTTCGAATCTATAATGGATTTCGACACCCTGTTAGACCATTTAATCAATAACCATAATGCAAATTATGATAAATCTATAACGACATGCTTACAACCTTATAAACTTATTAAGGATCACATGGCGTGTCCGAACTGTCCCGGTGAAGTGTTCAGATTCTTTGGTACTCTATTGAAACACATGAATAATAAGCACACTAACAATAACATTATCTGCGTCTACTGCGGTCAGACGTTTAGGCGCGATCAAAATTTACGCGTACATATTTGGCGGCATCACAGAGACGGTAGATTTAAATGCAACATTTGTGGGGCAGAGTGCAATATCCCCTCGAGATTGTACATGCACATGGCGAAAGCGCACGGCGTGAAAGCGGCGAAGTGTCCTAAATGCCCGGAGAGTTTCTCCACTCAGTATTTGCGACAGAAGCACCTGATAGAAGCACACGACTCCGGCCACAAGTGCTCGTACTGCGGGAAACTGTTCACTCGGAACTCGTTCATGAGAGATCACATACGGCGTACACATCTCAAGGAAAAGAACGTCGAGTGTTCTATTTGTAATATGAAGTTTTTTAACAACATCCTCCTCAGACGGCATATGGTGAAACACAGCGGCGAAAAGAATTTTCATTGCGACATGTGTGGGGAGAGATTCTTCTGGAGGAAAAGTCTTCGAACGCACATGGCTAGGCATAACAAACATATACcgatacatatttaa
Protein Sequence
MEFDEIVVKESPGLCRCCLSEGCYKDLGSEYSWMSETEIYAEMLLECFDISISEHPTGPNGSNRLICEVCITRLRDACNFKKQVLESEKKFVDLVAKGEFRPKVLLYQSQMKSEINLEFDDETGADDGEVEYLEEEVDFVDEELLKAEGMPSASASEDITVSALPVKGKRGRPRKTPAPALKPERKAKVPKLEDKPKTSKAVAKGENRPSAMAMEKPTNWSQLSATKRNRLMKSNAIVVLESSTVIPFKWQRQNYLCFFCHKPFKKTDLLKKHTRDEHTETKKSNIKAAVTYLRRDEKVKIDVSVIDCRVCGEKLNNLNSLLTHLSTLHDKSFTEQSGNFGLIPYKLESDPNVFQCALCQEKFQYFIKLNEHMNLHFGTYICDLCGKGFLSQNRLRCHVLSHGSGFRCSLCTETFDSLTLKSNHECKVHKKAKLCKCFYCDETFPNYTLRKRHHHLEHNIEMPGYNCPICHKTFEIESKMQGHLKEVHIREKNFSCYVCDQQFFSKTQLQKHMIKHFGERVHQCEVCKKSYARKQTLRDHMRIHSDDKRYVCSLCSQSFVQNNGLRQHMRVRHPEYVKPRKYKGCESSSMRRRRNLQILFNSTTIIPFKWRGKYLCFYCSKDISEYAALRKHTKSHGDCSTLDHSLKVLKGGQNMEIKIDVSDITCEICSEPFPSFDDIINHLYVKHKLEYDRGVEMAIEEYRLVDLNCLVCDEKFTYFGYLVSHVNNNHPKNCLICDKCNQKFNKKRDLFSHMKNYHREGGYQCEMCPQNFSSLNILRKHRNNRHLTRCNVCQLKLPSAALKLKHMEIEHPDDGSLQCDNCFKEFHTKQGLRMHVRKCKGEGDLYEIEVRKKDYDPMDLDENYEDPVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFQDSDLMREHTVLEHPLCDVTQKCIRKCRESVACVKIDISSLACKICFESIMDFDTLLDHLINNHNANYDKSITTCLQPYKLIKDHMACPNCPGEVFRFFGTLLKHMNNKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKAHGVKAAKCPKCPESFSTQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDMCGERFFWRKSLRTHMARHNKHIPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01136017;
90% Identity
-
80% Identity
-