Basic Information

Insect: Polylopha cassiicola
Gene Symbol: -
Assembly: GCA_038024825.1
Location: CP149065.1:1649519-1656811[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 32 0.00072 0.041 14.8 2.2 1 20 78 97 78 99 0.95

2 32 2.6 1.5e+02 3.6 0.1 3 23 128 148 127 148 0.95

3 32 0.0074 0.42 11.6 0.4 2 23 171 192 170 192 0.97

4 32 0.027 1.5 9.8 0.1 1 23 196 218 196 218 0.95

5 32 0.27 15 6.6 0.3 1 14 223 236 223 246 0.78

6 32 0.04 2.3 9.2 0.5 1 23 252 275 252 275 0.95

7 32 0.0049 0.28 12.1 1.6 1 23 282 305 282 305 0.97

8 32 2.2e-05 0.0013 19.5 0.4 3 23 314 334 312 334 0.97

9 32 8.4e-06 0.00048 20.8 4.4 1 23 340 362 340 362 0.98

10 32 0.00029 0.017 16.0 0.5 1 23 365 388 365 388 0.96

11 32 0.0062 0.35 11.8 0.4 1 23 465 488 465 488 0.96

12 32 1.2 69 4.6 1.8 2 23 515 537 514 537 0.92

13 32 0.18 10 7.2 4.0 1 23 559 581 559 581 0.97

14 32 0.00021 0.012 16.4 0.9 1 23 585 607 585 607 0.98

15 32 8 4.5e+02 2.0 0.3 1 15 612 626 612 635 0.74

16 32 0.0056 0.32 11.9 0.1 1 21 641 661 641 664 0.90

17 32 0.098 5.6 8.0 1.2 3 21 673 691 671 692 0.90

18 32 0.32 18 6.4 0.6 2 23 789 811 788 811 0.94

19 32 0.19 11 7.1 0.7 1 23 833 855 833 855 0.97

20 32 8.9e-06 0.00051 20.7 0.7 1 23 859 881 859 881 0.97

21 32 0.46 26 5.9 0.1 1 23 886 909 886 909 0.96

22 32 0.0076 0.43 11.5 4.9 1 23 915 938 915 938 0.96

23 32 0.034 1.9 9.5 0.1 1 23 996 1018 996 1018 0.96

24 32 5.8 3.3e+02 2.4 0.4 2 23 1042 1064 1041 1064 0.93

25 32 0.0025 0.14 13.0 5.0 1 23 1086 1108 1086 1108 0.98

26 32 0.0057 0.32 11.9 0.3 3 23 1114 1134 1113 1134 0.95

27 32 0.0068 0.39 11.7 0.5 1 23 1142 1165 1142 1165 0.95

28 32 0.38 22 6.2 0.5 1 23 1171 1194 1171 1194 0.93

29 32 0.13 7.6 7.6 3.3 1 23 1200 1223 1200 1223 0.96

30 32 0.00045 0.025 15.4 0.2 1 23 1229 1251 1229 1251 0.96

31 32 3.4e-06 0.00019 22.1 0.8 1 23 1257 1279 1257 1279 0.99

32 32 0.00018 0.01 16.6 4.7 1 23 1285 1307 1285 1308 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	32	0.00072	0.041	14.8	2.2	1	20	78	97	78	99	0.95
2	32	2.6	1.5e+02	3.6	0.1	3	23	128	148	127	148	0.95
3	32	0.0074	0.42	11.6	0.4	2	23	171	192	170	192	0.97
4	32	0.027	1.5	9.8	0.1	1	23	196	218	196	218	0.95
5	32	0.27	15	6.6	0.3	1	14	223	236	223	246	0.78
6	32	0.04	2.3	9.2	0.5	1	23	252	275	252	275	0.95
7	32	0.0049	0.28	12.1	1.6	1	23	282	305	282	305	0.97
8	32	2.2e-05	0.0013	19.5	0.4	3	23	314	334	312	334	0.97
9	32	8.4e-06	0.00048	20.8	4.4	1	23	340	362	340	362	0.98
10	32	0.00029	0.017	16.0	0.5	1	23	365	388	365	388	0.96
11	32	0.0062	0.35	11.8	0.4	1	23	465	488	465	488	0.96
12	32	1.2	69	4.6	1.8	2	23	515	537	514	537	0.92
13	32	0.18	10	7.2	4.0	1	23	559	581	559	581	0.97
14	32	0.00021	0.012	16.4	0.9	1	23	585	607	585	607	0.98
15	32	8	4.5e+02	2.0	0.3	1	15	612	626	612	635	0.74
16	32	0.0056	0.32	11.9	0.1	1	21	641	661	641	664	0.90
17	32	0.098	5.6	8.0	1.2	3	21	673	691	671	692	0.90
18	32	0.32	18	6.4	0.6	2	23	789	811	788	811	0.94
19	32	0.19	11	7.1	0.7	1	23	833	855	833	855	0.97
20	32	8.9e-06	0.00051	20.7	0.7	1	23	859	881	859	881	0.97
21	32	0.46	26	5.9	0.1	1	23	886	909	886	909	0.96
22	32	0.0076	0.43	11.5	4.9	1	23	915	938	915	938	0.96
23	32	0.034	1.9	9.5	0.1	1	23	996	1018	996	1018	0.96
24	32	5.8	3.3e+02	2.4	0.4	2	23	1042	1064	1041	1064	0.93
25	32	0.0025	0.14	13.0	5.0	1	23	1086	1108	1086	1108	0.98
26	32	0.0057	0.32	11.9	0.3	3	23	1114	1134	1113	1134	0.95
27	32	0.0068	0.39	11.7	0.5	1	23	1142	1165	1142	1165	0.95
28	32	0.38	22	6.2	0.5	1	23	1171	1194	1171	1194	0.93
29	32	0.13	7.6	7.6	3.3	1	23	1200	1223	1200	1223	0.96
30	32	0.00045	0.025	15.4	0.2	1	23	1229	1251	1229	1251	0.96
31	32	3.4e-06	0.00019	22.1	0.8	1	23	1257	1279	1257	1279	0.99
32	32	0.00018	0.01	16.6	4.7	1	23	1285	1307	1285	1308	0.96

Sequence Information

Coding Sequence: atgccaaaGAAAAGTACttccaaagttcgggagtggcacgtgacgtcacggctaggATGCTGTGGCCAATCGGAAAACGAGgccaacataaaaatacaggCAGATAAAATAGAGGAAAAACCGCGGTACAAGAGAAGCGCTCGCGCAGAAGCTAGGCTCCTTACAAAGAAGAATGCCAGCGCCATACTCGAATGCTGGACACTGTATCCCTTTAGATGGAAAAGAAACCGCTTCAAATGCGCCTACTGCGAAACCAGCTTCACAGACTGTAGCCTGTTGAGACACCACGTCGCCAACTGTTCATTGAAATACACAATCAAAGACATCTACAGCAAGTTCAAGGAGATGTCTCTTATTAATGTTGACATCACAGACGCTCTGTGTCGAATTTGTGCCACACCGTACACAGACGTGAAGCAAATGAGAGATCACTTAATTGCCCACGGTTACGAGTTTGACGTAAATCAACCGGACGGGGTACTCCCGTTTTGTTTAGACAAGGAATCCTGGCGCTGTGTCATCTGCAACGAAAGAttcaataactttttaaaactcTACGAACATATGAATGTTCATTATCAGCATTACATTTGTGCTACTTGCGGCAAAGGCTACATGACGGCGCCTAGGTTGAGGAAACATTCAGAAGTCCATATAACTGGGTCGTTTCCTTGCAACGAATGCGGTAGGATTTTCAATATGCGAGCGGCAAGGGATTACCACAAAGCGCACGCGCACGCGAAAGCACCTAGATACGAGTGCCCGCAATGCAACATGCGTTTTGATGGTTACTACGATAGAATGAACCATCTAAACGAAACGCATAGAGAGAAGGAAGTGTTGTACAGTTGTCAGCATTGCGAATTGACGTTTAAAACGTCAGGAAAGCGAGCTATTCACGTACGCTCTGTACATTTTCCACCTCAGAGGGATTTCGGGTGCCCACGATGCGATTGGCAATTCAAAACTGCCTACGAATTGAAAAGGCATATGGTTAAACATACAGGGGAGCGGAATTTCCACTGTCATATATGTGATAAAACGTTTCCTAGAAATAGAGCGTTGAGAACTCATTTGAAAATTCACgaagattttaattgtaaatggtGTGGTGCATTGTTTAAGCAGCGGGTGCAACTGCAAACGCATTTGAGGGAGTTGCATCAGGACGTGTgtTCCGCTAATGCGGATGCGGAGGGAAAAGTAAGAGTCATATGCGTTAGGAAGTTAAAGGAGAACGTTAGCGCGCGGCAGATGCGCAGGCGCCGGCGCGCCAACAACGAACTGCCGGAGGAATCCGAGAAACGCATAGCGAAAACAATGATGCGACGAAACGCTATAACGCTCCTAGAATGTTCCACGGCTTGGGCGTTTCGTTGGTTCCACAACGCTTTCTACTGCTCGTATTGCGACGCTAAATTCGTAGACACAACGCCTTTGCGAGAACACGTGCAAAGTAGTCACTTAAGCGAACCGCCCACTAAAAAGATATTCGCCAAGTTAACAGAGAATAATATGGTGAAAATTGACATAGGGAATCTCAGTTGTAGATTGTGTAATCATAATTTAACCGATATAGAACATTTGAAGGACCATTTAGTGTCGCTACACGGCAAGACGGTAAACAGGGACTATAGCGATGGGGTGTTGCCCTTTAAACTTGACCAGAACGGATTTTTCTGCCAAAAGTGCTTCTTGCATTTCGTTAGCTTTTCCAAAGTGAACGAGCATATAAATACGCACTACAAAAACTATATCTGCGACTCTTGCGGCAAGGGTTTCGTTTCCAAGTCGCGTTTCAGAACTCACGTGCAGTCGCatgaagtaggtagttttCCTTGCGGCGACTGCGACGAGGTGTTAGAGACTAGGGCCGCTAGGATGTGCCATAGACTGCGGGTACATAAAAAAGGTATACGATATACCTGCCCACGTTGTCCTGAAGTGTTTACGACTTACTACGCTCGTGCTAAGCATTTAGTAGACGGTCATGCCCAACAACAGACGGATTACGGCTGTTCGGTCTGCGGGAAGACCTTTGAAACTAGCTGCAAACGAGCGGCGCATTTTCGCAGTGGCGTGGTGACGGCTAGACTGTCAGACACTGAAGAggcagttaaaataaaatggagaCGAAAGCGAAGAGTTGTAGAGGATAAAGCTAACGCTGCCATTATTCTACAGTATTCCAATGCTGTAGTCTTTAGGTGGCAACGTGGTAAATTTATGTGCGCGTATTGCCCTGTAACATGCGCTAATGTTGGTGAAGTGAGAATTCACTCCAACTGTCATGGTAGTAAGCTAGATATATTTGAGAATCAAGTGAGAAACTCGTTTCCTTTAAGAATAGACGTCACTGATCTCACTTGTAACATATGCGATGAGAAAGTAAAGTGTTTAGAAGATTTAAAAAGTCACTTATCGATTGTACACTCAAAGAGTGTTAACCCAGAGTATGATGATGGTGTAGTGCCTTTTGTTCTAACGGGAAAAGAGTATAGGTGTGTCCATTGCGGACTCCTGTACGAGGGGTTTATGAGTTTATTCGTTCACATGAACGATCATTACCAAAGCTACATTTGTCCTACTTGTGGCAAAGGGTTTTCTGGAAAGCATAAACTTCGAGCGCATCAGATGGGCCACGAATCAGGACAGTTCGCCTGCTCAAAGTGCGAGGTCGTATTGCCGAACCGACTAGCCAAAAACAGACATATGTCCACAGTCCATAGGCCTAGAGGTCGATACCGGTGCCCCATATGCGACACGCATTTCAGTTCCTACCACTCCAGATTAAGGCATCTCGACAAAACGCACGGACAGAAAGCCGAATATCGATGTGGTTTGTGCCCCTCTGTGTTCGGTAGCGggCCCGTCGAACACAAACTTAAATGGAAACCGAAAAGGAAGTATAACGATCACAGAGACAATGCGGCTATTATTATAGAGTGTTCCAACGTGTGCCCGTTCAGGTGGAAACGGGGCGCGTTCACGTGTGCTTTCTGTCCCACGTCATTTGGAGATTTCAGTGACGTCAGAGAGCATGTTCTAGAACATCCTAATAGAGTAGAGGCAATGAGACTAGCTCGCTCGTTAGACAATGTTAAAGTCGAAATAAGTGGCTTGAGATGTGAACTCTGTCTAGAACACATAAAAGATGTAGAGACACTAAAAGACCATCTTATTAACTCGCATAGTAAACCTATTAATACAGAACACGGCATCGGTATCACACCTTTCTTGATAGAAGGAAAGCTGTTCCAGTGTTCTCATTGCGATGAACACTTCGAATTGTTCTCCAAATTGAATACTCATATGAATCTCCATTATCCCAACAACATATGTTTTCAATGCGGCAAAGCCTTCTCCGCCGCGCATAGATTAAAAGCTCATTTAGTTATCCACGAGGCTTCAAACAGTCTCCAATATAAATGTACGAAATGCGATGACGTTTTTACCACTAGAGCTTTAAAGAACAGTCATATGGCGTTAGTTCATGGACCTGAATTTAGGTACAGGTGTCCTTATTGCAATGATTCGTTCTTAAGGTACGCTGATAGGGCTAAACACCTGAAGTTAGCGCATGATAGGAAGGTAGATTATCCCTGCCATTTATGTACAGCTGTGttttcaatgtgtaatcaGAGGACGAAGCATATTCAGCAAGTGCATATAAGACATAAGCAATTTTTCTGCGCTCTGTGTCCGTATCAATTCGTGACAGCGGCTCAGTTGAGAAATCATATGGTAAAACATGTAGGGGAAAGGAAATATCAATGTGAGATTTGTAAGAAAGCCTATGCTAGGACGAAAACTTTAAGAGAACATATGcgtatacataataatgataaacGGTTTGTCTGTGAGTATTGTAACAATGCTTACGTACAGAAATGTAGTCTGCAAAGTCATATGAGGACTCACCATCCTAATGCAGAGCCTCTGAAAAAGATAATGCCCAATGTATATTGA
Protein Sequence: MPKKSTSKVREWHVTSRLGCCGQSENEANIKIQADKIEEKPRYKRSARAEARLLTKKNASAILECWTLYPFRWKRNRFKCAYCETSFTDCSLLRHHVANCSLKYTIKDIYSKFKEMSLINVDITDALCRICATPYTDVKQMRDHLIAHGYEFDVNQPDGVLPFCLDKESWRCVICNERFNNFLKLYEHMNVHYQHYICATCGKGYMTAPRLRKHSEVHITGSFPCNECGRIFNMRAARDYHKAHAHAKAPRYECPQCNMRFDGYYDRMNHLNETHREKEVLYSCQHCELTFKTSGKRAIHVRSVHFPPQRDFGCPRCDWQFKTAYELKRHMVKHTGERNFHCHICDKTFPRNRALRTHLKIHEDFNCKWCGALFKQRVQLQTHLRELHQDVCSANADAEGKVRVICVRKLKENVSARQMRRRRRANNELPEESEKRIAKTMMRRNAITLLECSTAWAFRWFHNAFYCSYCDAKFVDTTPLREHVQSSHLSEPPTKKIFAKLTENNMVKIDIGNLSCRLCNHNLTDIEHLKDHLVSLHGKTVNRDYSDGVLPFKLDQNGFFCQKCFLHFVSFSKVNEHINTHYKNYICDSCGKGFVSKSRFRTHVQSHEVGSFPCGDCDEVLETRAARMCHRLRVHKKGIRYTCPRCPEVFTTYYARAKHLVDGHAQQQTDYGCSVCGKTFETSCKRAAHFRSGVVTARLSDTEEAVKIKWRRKRRVVEDKANAAIILQYSNAVVFRWQRGKFMCAYCPVTCANVGEVRIHSNCHGSKLDIFENQVRNSFPLRIDVTDLTCNICDEKVKCLEDLKSHLSIVHSKSVNPEYDDGVVPFVLTGKEYRCVHCGLLYEGFMSLFVHMNDHYQSYICPTCGKGFSGKHKLRAHQMGHESGQFACSKCEVVLPNRLAKNRHMSTVHRPRGRYRCPICDTHFSSYHSRLRHLDKTHGQKAEYRCGLCPSVFGSGPVEHKLKWKPKRKYNDHRDNAAIIIECSNVCPFRWKRGAFTCAFCPTSFGDFSDVREHVLEHPNRVEAMRLARSLDNVKVEISGLRCELCLEHIKDVETLKDHLINSHSKPINTEHGIGITPFLIEGKLFQCSHCDEHFELFSKLNTHMNLHYPNNICFQCGKAFSAAHRLKAHLVIHEASNSLQYKCTKCDDVFTTRALKNSHMALVHGPEFRYRCPYCNDSFLRYADRAKHLKLAHDRKVDYPCHLCTAVFSMCNQRTKHIQQVHIRHKQFFCALCPYQFVTAAQLRNHMVKHVGERKYQCEICKKAYARTKTLREHMRIHNNDKRFVCEYCNNAYVQKCSLQSHMRTHHPNAEPLKKIMPNVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00342421;
90% Identity: -
80% Identity: -