Pcas011820.3
Basic Information
- Insect
- Polylopha cassiicola
- Gene Symbol
- RFX3
- Assembly
- GCA_038024825.1
- Location
- CP149052.1:11414579-11439595[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-36 1.2e-32 112.7 0.0 3 78 272 347 270 348 0.97 2 2 5 2.4e+04 -3.6 0.0 24 32 954 962 942 969 0.69
Sequence Information
- Coding Sequence
- atgtctGAGATGGGGTTTGAGAATGTGTTTTACCTGGAAAACTTTGAGTGTTGCGGCGACGAGGTGCTAGTGGAGTCCTCGCCGCCCGGCTCGCCAGCCATGGCGGCGCGGCTCGCGCAACCCGCTCAGtcGAGCGCAGGCGCCGCGTCTCCGAGCGCCGTTCGCGAGCTGATCGTCATTCCTGAGATACCAAACACTATCAACTTGCAGCATGCCATACAACAGgTATCGAGCACAGTAGTGGAAGTGAATGGAGACAGCTCCGGTCATTCTAGTCCGACCACCACAGAGGCCCAGCATACGTACATCACTGTTGCAATGAACGACGATTGGCAGGAGACGGCTATGCCAGTCAAAGCTGAGATTCACAGCGACCAAGAAAGCGAGGGCAGCAATGGGGTCAACTACCACGTGCAATATGTGGAACCACAGGAGATATACACACAGGAGTCgcatatGTATGAACGGTCAATGTATATGAATGGTATGAGAATTTGGAAAAACTGGTCGTGGTTGGCGGAGTGGAAGGCAAGAGAGCCCGGAGGCGCTCGCCAACCAGGTGGTCTGACCAGATTAAGGAAGTCACATCCTCAAGCAAATTCCATCAAGCGggaGACTCTCCGCACGTATCCCGTGTACAACGTGACGACGGTCCCGCCGGAGGGTTCCGCGGACACGCCGTGGAGCGAGGAGTTCTCGTACAACGTGGTGGTGGGCGCGGACGAGGCGCCGCCCTCCCCCGCGCCGGCGCCGCACACCCCCCCCGCCGCGCCGCACACGCCGCACACGCCGCCGCAGCCGCGCATGCCGCCCGCCACCGTGCAGTGGCTGCTGGACAACTACGAGACGGCCGATGGCGTGTCTCTCCCGCGCTCTACTCTGTACGCCCACTACCTGCGGCACTGCGCCACGCACCGCCTGGACCCGGTGAACGCGGCGTCATTCGGGAAACTCATCCGGTCTGTGTTCGTGGGCCTCCGGACTCGCCGCCTCGGCACGCGGGGCAACTCGAAGTATCACTACAATGGTATACGCGCCAAGTCCCAGGCGGCCGAGGACGCGGTTGAAGTTGAAGAGAAACACTCGGCCGATGTTCAGGAACCGGTGGACCGTACCTCGGAGCCGGAGGGGGTGAACGCGGGCGGGGGCCCGGGCGCGGCGCTGCACCGGCAGTACCTGGGCGCGGTGGGCGCCGTGGAGCCGCCGGCGCTCGCCCTGCACGCCAACGACGTGCCGCCGGCCGCGCTGCCCGCGCTGCTCGCGCACCACAGGGAACACGGCGTAGAATTCCTCGAAGCCGTCGCCGCGTTAGACATCGCAGCTGTAGAGCGGTCTCGCCGTAACTTCTGGCGCCGTCCGCCGCCGGAGCTGTGCCGCCGCGTGCTGTGCCGGCTGGCGGCCAAGCGCGAGGTGGCCGCGTGGCTGCGGCGCGCCGACCTCGAGCTGTACCAGAAAGCTGTGGAGATGCTTCTGCCGGATGTGCTGAGGCCTATACCATCGCAGCTCACGCAGGCGATCCGCAACTTCGCGAAGAGCCTGGAGTCCGCGCTGGCGGCCGGGTCGGGCtgcgcccccgccgccgccgcgcgcgcgcaggcctccgccgccgccgcgctctcCGCCGCGCTGCGCCGCTACACCAGCCTCAACCACCTCGCGCAGGCCGCCCGCGCCGTGCTCGCCAACGCGCACCAGATACACCAggtgcacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacacacacgcaggcctccgccgccgccgcgctctcCGCCGCGCTGCGCCGCTACACCAGCCTCAACCACCTCGCGCAGGCCGCCCGCGCCGTGCTCGCCAACGCGCACCAGATACACCAggtgcacacacacacacacacacacacgcacacacacacacacacacacacgcaggcctccgccgccgccgcgctctcCGCCGCGCTGCGCCGCTACACCAGCCTCAACCACCTCGCGCAGGCCGCCCGCGCCGTGCTCGCCAACGCGCACCAGATACACCAggtgcacacacacacacacacacacacacacacacgcacacgcaggcctccgccgccgccgcgctctcCGCCGCGCTGCGCCGCTACACCAGCCTCAACCACCTCGCGCAGGCCGCCCGCGCCGTGCTCGCCAACGCGCACCAGATACACCAggtgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcaggcctccgccgccgccgcgctctcCGCCGCGCTGCGCCGCTACACCAGCCTCAACCACCTCGCGCAGGCCGCCCGCGCCGTGCTCGCCAACGCGCACCAGATACACCAggtgcacacacacacacacacacacacacacacacacacacgcacacacacgcaggcctccgccgccgccgcgctctcCGCCGCGCTGCGCCGCTACACCAGCCTCAACCACCTCGCGCAGGCCGCCCGCGCCGTGCTCGCCAACGCGCACCAGATACACCAgATGCTCTCGGACCTGAACCGCGTGGACTTCCGCGTGGTGCGCGAGCAGGCCGCGTGGGCGTGCTCGTGCGGGGCCGCCGCCACCGCGCACCGCCTCGAGGCAGACTTCAAGGCGACGCTGGGGCGCGGCGCGTCGCTGGAGCAGTGGGCGGCGTGGCTGGAGGGCTGCGTGCGCGGCGCGCTGGCGGCGCACGAGCGCAAGGCGGACTACACTGCGCGCGCGCGGCGGCTGCTGCTCGACTGGTCCTTCTACTCCTCGCTCGTCATCCGAGAACTCACGCTCAGaTCGGCGGCGTCGTTCGGGTCGTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCGCGTCGCCGCGCACCTGCGCGCGCCGCCCATCGCCGTCATGCAGCGCGCGCCGGAGGAGGAGGAGTCTATCCCGGAGGACGGCAACCGCGACGACGAGGACGACCCCGACTGGGACTGGGGCTCCGACGACGACAGCGACGAGCCCGACGGCAAGAAGCTCAAGCAGGAGTGA
- Protein Sequence
- MSEMGFENVFYLENFECCGDEVLVESSPPGSPAMAARLAQPAQSSAGAASPSAVRELIVIPEIPNTINLQHAIQQVSSTVVEVNGDSSGHSSPTTTEAQHTYITVAMNDDWQETAMPVKAEIHSDQESEGSNGVNYHVQYVEPQEIYTQESHMYERSMYMNGMRIWKNWSWLAEWKAREPGGARQPGGLTRLRKSHPQANSIKRETLRTYPVYNVTTVPPEGSADTPWSEEFSYNVVVGADEAPPSPAPAPHTPPAAPHTPHTPPQPRMPPATVQWLLDNYETADGVSLPRSTLYAHYLRHCATHRLDPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYNGIRAKSQAAEDAVEVEEKHSADVQEPVDRTSEPEGVNAGGGPGAALHRQYLGAVGAVEPPALALHANDVPPAALPALLAHHREHGVEFLEAVAALDIAAVERSRRNFWRRPPPELCRRVLCRLAAKREVAAWLRRADLELYQKAVEMLLPDVLRPIPSQLTQAIRNFAKSLESALAAGSGCAPAAAARAQASAAAALSAALRRYTSLNHLAQAARAVLANAHQIHQVHTHTHTHTHTHTHTHTHTRTHTQASAAAALSAALRRYTSLNHLAQAARAVLANAHQIHQVHTHTHTHTHTHTHTHTQASAAAALSAALRRYTSLNHLAQAARAVLANAHQIHQVHTHTHTHTHTRTRRPPPPPRSPPRCAATPASTTSRRPPAPCSPTRTRYTRCTHTHTHTHTHTHTHTHTHTHTQASAAAALSAALRRYTSLNHLAQAARAVLANAHQIHQVHTHTHTHTHTHTRTHTQASAAAALSAALRRYTSLNHLAQAARAVLANAHQIHQMLSDLNRVDFRVVREQAAWACSCGAAATAHRLEADFKATLGRGASLEQWAAWLEGCVRGALAAHERKADYTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSYLIERRVAAHLRAPPIAVMQRAPEEEESIPEDGNRDDEDDPDWDWGSDDDSDEPDGKKLKQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -