Pter064234.1
Basic Information
- Insect
- Polydrusus tereticollis
- Gene Symbol
- -
- Assembly
- GCA_963920685.1
- Location
- OY987329.1:133481159-133497509[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.012 2e+03 2.0 0.0 23 47 205 229 200 234 0.86 2 5 0.061 9.6e+03 -0.2 0.1 21 44 231 254 229 259 0.85 3 5 9.1e-06 1.4 12.1 0.0 20 44 258 282 256 286 0.93 4 5 0.0068 1.1e+03 2.9 0.0 23 44 317 338 310 346 0.87 5 5 3.1e-06 0.48 13.6 0.2 25 53 347 375 339 376 0.86
Sequence Information
- Coding Sequence
- ATGCAAGAAAAAGATGGTTTTTGCCTACAGTGTCAGAGGCCATTATTAGCGCCTTCTAATAGATTGGTGCAGGACTCCTGTGGGCATAAGAAGTGTCGAGCTTGTCTTTTGGATGATGTAGACAACTGTAAACAGTGCTTTGGGTCTGTTTCAATAAATGAACAAAATGGGGAGAAAATAGAAAATCTACTCAAAATAACTGATAATCACACTGCTGTGATCCAATGCAATGGAAAAGCAAGACTTAACTGTGATAAAATCTTGGATGAGGTACTTGAAAAGAAAGGTGAAAGAAATAaaaagcaagaattaaatttcaAAGAATGTGCCAGTGAGACAGTcataaaaaaacaagaaaataaagaaatgaaaaagTTAAGGGAGAAAATTGGCAAAAAGAAGATACTTAATGTTCCCTCTCATATAATCTTAAAGTCAGACCCACTTTCATATTTGTGTACTATATGTaataaaaccttttttacaaAGTCACATGTCAGATATCACCAATACTGTGCAGGTGaaataaaaccaTACAAATGCAAAGTTTGCGGGAAGGAGTTTATTTTAAAAGCTCAATTACAAGTACACATGTACAAACATGAAACTGTGAAACCTTTCAACTGTACTATTTGCCAGAAGTCATTCAGTGAGAAAAGTAAGCTTTCACGGCACATGGTATTGCATTCCTCAGAGAAGAATTACATATGCCCAGATTGTGCAAAAGCATTCAAAAGCAAAGAGTCTTTAAGAATTCACTGCTTGATTCATAAGGCTGAGAAGCCATTTGCTTGTACAGTTTGTACAGCAAAGTTTAACAATTCATCAAATTTGAAGAAACATTTAGTGTCACATTCAGATGAAAAAGCTCATATGTGTGACCAGTGTGGGAgaagatttaaattaaaatggGCCCTATCCGTACACAGAAAATCTCATTTAAGAGTGAGGCCCCATACTTGTAATTTTTGCTTTAAGAATTTTATCAACTTTAAGGATTTGCAGAGGCATGCATTGGTGCATTCAGAATCGAAAGGATACACTTGCGGCATCTGCCACACTAGTTTTCGACGCAAAGACAACCTACACCGGCACATGAAGAACACGCACCCAGGTAAGAAGGGTGAGGTAATAAAGAACGAATCGAAAGTCCCAGAGTTACCAAAAAAATCCGTAGTCATTGATAATCCGAATGCTATAAAGGTGATAACCGCTTCGCCGGCTATTACGAAAAGTATGGCCGAGGCAGTGGTGGCGCCACTGCAGCAACATACCGCTAAATCTACTGATTCTAGGCCGACCGGATCTGTCATCAACGGACCAATCAAGCTCGCGTTTAAGACGCCGGCTTTCAAGAGCCATTACAATATTGCGAGAGACTGCGACTTCATACCGCCTGCTCAAATTACGAAGTCTCTCCCACTTGCAGAATCCGTAGACATGGCACAGAACGTATTATCTTCTATTGCTGAACCTCTTAATGTAAATATGAATATAGACGAGCTCACATCTAaagaaatatgtcaaaaactCTTGTCTGTACCGAGCAAATGCCCAGATGAATCTATATTAGTACCTACAGCACCAGTGTCTGTGCCTCCACAGCAACATCTAGCTTCGTACTCTAGTACCTTTCATTATGAAACGTCGTTCCAATATGGTAAACATGCAATGATTAAAAACATTAAGTTTAAGGTTCCCGAGCAGTATACGAACTTATTTAAACATAATACTAAGATTAGTGATAACTATGATCAGCCGGAGACTTCAGAGACCAAAGTATATTCAGAGTTAAAGCCAGTGGTTAATAAAAGTGTTATAGTGAATAACAGTAATCTTAACCAAACTAGCGATATTCATTGGCGCCGAAGGACTTCGCAGAATCTCGTGCTTAAAAATTAA
- Protein Sequence
- MQEKDGFCLQCQRPLLAPSNRLVQDSCGHKKCRACLLDDVDNCKQCFGSVSINEQNGEKIENLLKITDNHTAVIQCNGKARLNCDKILDEVLEKKGERNKKQELNFKECASETVIKKQENKEMKKLREKIGKKKILNVPSHIILKSDPLSYLCTICNKTFFTKSHVRYHQYCAGEIKPYKCKVCGKEFILKAQLQVHMYKHETVKPFNCTICQKSFSEKSKLSRHMVLHSSEKNYICPDCAKAFKSKESLRIHCLIHKAEKPFACTVCTAKFNNSSNLKKHLVSHSDEKAHMCDQCGRRFKLKWALSVHRKSHLRVRPHTCNFCFKNFINFKDLQRHALVHSESKGYTCGICHTSFRRKDNLHRHMKNTHPGKKGEVIKNESKVPELPKKSVVIDNPNAIKVITASPAITKSMAEAVVAPLQQHTAKSTDSRPTGSVINGPIKLAFKTPAFKSHYNIARDCDFIPPAQITKSLPLAESVDMAQNVLSSIAEPLNVNMNIDELTSKEICQKLLSVPSKCPDESILVPTAPVSVPPQQHLASYSSTFHYETSFQYGKHAMIKNIKFKVPEQYTNLFKHNTKISDNYDQPETSETKVYSELKPVVNKSVIVNNSNLNQTSDIHWRRRTSQNLVLKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01239477;
- 90% Identity
- iTF_01244513;
- 80% Identity
- iTF_01244513;