Pter084342.1
Basic Information
- Insect
- Polydrusus tereticollis
- Gene Symbol
- -
- Assembly
- GCA_963920685.1
- Location
- OY987331.1:14012811-14017482[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9e-06 0.003 20.9 1.1 2 23 324 345 324 345 0.98 2 12 4e-05 0.013 18.9 9.3 1 23 351 373 351 373 0.98 3 12 9e-05 0.029 17.8 3.2 1 23 379 401 379 401 0.98 4 12 6e-05 0.02 18.3 1.5 1 23 407 429 407 429 0.97 5 12 1.8e-05 0.0058 20.0 0.7 1 23 435 457 435 457 0.99 6 12 5.7e-08 1.9e-05 27.8 3.5 1 23 463 485 463 485 0.98 7 12 3.9e-05 0.013 18.9 2.7 1 23 490 512 490 512 0.98 8 12 0.00015 0.048 17.1 2.3 1 23 518 540 518 540 0.98 9 12 1.5e-05 0.0048 20.3 0.3 1 23 545 567 545 567 0.97 10 12 9.6e-08 3.1e-05 27.1 1.6 1 23 573 595 573 595 0.98 11 12 1.5e-06 0.0005 23.3 2.0 1 23 601 623 601 623 0.98 12 12 6.4e-07 0.00021 24.5 0.8 1 23 629 651 629 651 0.98
Sequence Information
- Coding Sequence
- ATGAACAACGAAATAAATTTATCCGATTGTTGTAGAACATGTTTGCGTTTAGGTTGCTCTTTAACTGCCATAAATGCTGAGGATAAAGACTCTGTTAAGTTTAGTTTTAAACTGATGTCTTGCATAGCCGAAATtGCTTGGTCAAGAATTGATATTCCACCTTTGATTTGTGACCAATGCATTGAACAACTCAGGATATCCTATAATTTTCGAAGTACATGTATTGCCGCAGATGAAACATTACAAAAATGTGTTAAACAATCTCACGCTACAAAAATCGAAACgaaggaaaatattttatttcatccaaAATATGATTGTGGCAATACCACTACAAGGCATGATAGTATTAGCAGTTTACCAGATGAGGACACAAATAACTCGGAGTATCTGCACCTAAAACATTTCTTGGATAGTGAAGAGGACTTAGGCAAAAATGAGACAATTTTATCTGACAATGAAATGTCTCGGAGTAGCACTCCAGAAAATACTGAAGaatcttttataaataattataatcaatCACACACAATTGAAATTGAGGTACAAGACATTCAAGAAATTATCATCCAAGCTAAACCTGATGAAGTGGAGGAGCAACATAAACTAATTTTAAGTGATGGGGAGGAGTACAGTATACTTAATACTAGCACTGACAACACAGAAGTAAGATGTATAGATGAAACAGAGCAAAACCATATTGTACATTGTAGGAGTACAGAAGAGATTGAAGAGAATAGTAGTGGGGAGCAAAACGAAGGAAAAAATAGTGAGCAGGTTGTATCAACTTTGATAGATAATAAGGACACAGTGTTGATGGGGTCTGAAAGTATCTTGGGTTTAGATCAGGTTGGTCGACTTCCTAAATTATACCCAATAGTAAAACCAACAAAAAGCACTGGTGTCCAAGTGCGTCCTCCAACTCCTGAAGGTAAACAATCAACAAAGCTTACAGGAAATCCTAATAATACTTGTACAGTATGTGGTAATACATACAGGAAGAGGGCCAACTTAAAAGTACACATGAGAAGTCATACTGGAGAAAAGCCATTTGAATGTAAATATTGTGAAAAGAGgtttcatCATTCTTCCCATCTTAAAGAACATATTAGACGTCACACTGGGGAAAAACCTTTTCATTGTAACCTTTGTTCCAAAAGGTTTACTATAAGAGGTGAACTCACAATGCATATGAGATCTCATACAGGGGAAAAACCTTTTGCTTGCAGTGACTGTGATAGACGCTGCCTAACAGCATCAGACTTAAAAATCCACATGCGGACCCATACTGGAGAGAAGCCTTATACCTGCGAAAATTGCGGTAAAAAATTTAGCAGCGCCTACATTTTGAGCTCTCATATGAAAATACATACAGGCGATAGGCCATTTCCATGTAAATTATGCGACAAAAGCTTTACGCAATCGTCCCATCTAAATGTACACATGAAGAAACACACTGGGGAGAAGTTTACCTGTAAATCTTGCCCAGCTACTTTTAGTCATTCCTCGCAGCTTACAGTTCACAAGAGAGAACACACAGgaaagCAACCTTACAAATGTGGGGTTTGCAACAAATTGTGTAACTATTCTTCAGAATTGCAGACGCACATGGCTAAACACACGGGACAAAAGTTTGCTTGCGCAATTTGCCAGAAGCAGTTTTCCACCGCGTCTTATCTGTCAGAACATACAAGAGTGCACACAGgtGAAAACCTCTTTCCATGCACATTGTGTGATAGAAGTTTTACTAGACAACAGTATTTGGAAAAGCACATTAGAACGCATACAGGTGAAAAGCCATTTTCTTGTTTTGTTTGCTCGAAAACTTTTAGCCAATCTTCCAGCTTAAAGGTGCATACACGAATTCACACCGGCGAAAGACCCTACGCTTGCAATCTTTGCgataaaacctttattacttcctCGGATTTAACATCTCAtgtgaaaaaacataaaaaatatatggATTTATAA
- Protein Sequence
- MNNEINLSDCCRTCLRLGCSLTAINAEDKDSVKFSFKLMSCIAEIAWSRIDIPPLICDQCIEQLRISYNFRSTCIAADETLQKCVKQSHATKIETKENILFHPKYDCGNTTTRHDSISSLPDEDTNNSEYLHLKHFLDSEEDLGKNETILSDNEMSRSSTPENTEESFINNYNQSHTIEIEVQDIQEIIIQAKPDEVEEQHKLILSDGEEYSILNTSTDNTEVRCIDETEQNHIVHCRSTEEIEENSSGEQNEGKNSEQVVSTLIDNKDTVLMGSESILGLDQVGRLPKLYPIVKPTKSTGVQVRPPTPEGKQSTKLTGNPNNTCTVCGNTYRKRANLKVHMRSHTGEKPFECKYCEKRFHHSSHLKEHIRRHTGEKPFHCNLCSKRFTIRGELTMHMRSHTGEKPFACSDCDRRCLTASDLKIHMRTHTGEKPYTCENCGKKFSSAYILSSHMKIHTGDRPFPCKLCDKSFTQSSHLNVHMKKHTGEKFTCKSCPATFSHSSQLTVHKREHTGKQPYKCGVCNKLCNYSSELQTHMAKHTGQKFACAICQKQFSTASYLSEHTRVHTGENLFPCTLCDRSFTRQQYLEKHIRTHTGEKPFSCFVCSKTFSQSSSLKVHTRIHTGERPYACNLCDKTFITSSDLTSHVKKHKKYMDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00444429;
- 90% Identity
- -
- 80% Identity
- -