Dabb036566.1
Basic Information
- Insect
- Diaprepes abbreviatus
- Gene Symbol
- -
- Assembly
- GCA_034092305.1
- Location
- JASJET010000141.1:4837197-4856862[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 4.2e-06 0.0006 21.8 1.1 2 23 334 355 334 355 0.98 2 9 3e-05 0.0043 19.1 9.3 1 23 361 383 361 383 0.98 3 9 0.0073 1 11.6 5.0 1 21 389 409 389 411 0.95 4 9 8.2e-05 0.012 17.7 2.2 1 23 417 439 417 439 0.97 5 9 0.00015 0.021 16.9 0.7 1 23 445 467 445 467 0.98 6 9 4.3e-08 6.1e-06 28.0 3.5 1 23 473 495 473 495 0.98 7 9 2e-05 0.0029 19.6 3.3 1 23 500 522 500 522 0.98 8 9 0.0057 0.82 11.9 2.4 1 23 528 550 528 550 0.97 9 9 2.8e-06 0.00039 22.3 1.2 1 23 555 577 555 577 0.98
Sequence Information
- Coding Sequence
- atggatatcgaaataaatttatcaaattgcTGTAGAACATGTTTACGTTTAGGTTGTCCTTTAACTCCTATTAGTGCTGAGGATAAAGATACagttaaatttagttataagttAATGACTTGCATTGCAGAAATTGCTTGGTCAAGAATAGATATTTCTCCCTTAATTTGTGACCAATGCATTGATCAACTAAGGATATCCTATGAATTTCGTAATACATGCATTACTGCTGATGAAACACTACAGAAATGTGTTAAACAatcacaaattaataaaattgagactaaagataatattttatttaattccaaGTATAATTGTGTTGATAGCAGTACTAGACATGATAGTATTAGTGATTTACCAGATGAAGACACAAATAATTCAGAATATCTTCATCTAAAGCATTTCTTGGATAGTGAAGAAGAATTAGGCAAAAATGAGGTAATATTGTCTGAAAATGAAATATCCAGAAGTAGTACACCTGAGAATACTGAAGAACCTTTCATTAATCATTATAATCAATCACAAACAATTGAAATTGAGGTACAAGACATTCAGGAAATTATCATTCAAGCTAAATCTGACGAAGTGGAAGAgcaaaataaactaattttaagTGATGGTGAAGAATACAGTATACAAGATCTTACCACAAGCACTGATCATACGGAAGTAGAAGctgttgaagaagaagaaggagaagagcAAAATCACATTGTACATCATATAAGCGCAGAAGCGAGCGAGGAAAATAATCATAAGAagcaaaatgaagaaaataatagTGAGCAAGGAGTTATAAAAACTGAAGAAGTAATATTATCTCAGTTTGACAAAATAGCAGGCACAGCAGTAGGTGAAACGATCTTAGGTTCAGAACAGATAATTCCAGTTTCCAAAATGCACCaaataataaaatcaacaaaaagTACTGGCGTTCAAGTTCGGCCGCTAACCCCAGAAGACAAAGGGTCAACAAAGGCTCCAGGAAACCCAAATACATGTTCGATATGTGGCAATACCTATAGGAAACGAGCTAATTTAAAAGTACACATGCGAAGTCATACTGGGGAAAAGCCATTTGAATGTAAATATTGTGAAAAGAGGTTTCACCATTCTTCACATCTTAAAGAACATATTAGGCGACACACTGGAGAAAAACCTTTTCACTGTAACCTTTGTTCTAAAAGGTTTACTATTAGAGGAGAACTTACGATGCACATGAGGTGCCATACAGGAGAGAAACCATTTGCCTGCACGGTTTGTGATAGGAGatgttTAACATCGTCAGATTTAAAAATTCACATGCGTACGCATACTGGAGAAAAGCCTTATACTTGTGAAAATTGTGGTAAAAAATtcagcagtggttatatcctAAGTTCCCATATGAAAATACACACAGGTGAAAGACCGTTTCCATGCAAACTATGTGACAAAAGTTTTACTCAGTCTTCCCATCTTAATGTACACATGAAAAAACATACAGGCGAGAAATTTACTTGTAAATTTTGCCCAGCTACTTTTACCCATTCCTCACAACTTACAGTTCATAAGAGAGAACACACAGGAAAACAACCTTACAAATGTATCGTGTGCAACAAATTGTGTAATTACTCTTCAGAATTGCAAACACACATGGCTAAACATACTGGACAAAAATTTTCCTGCACAATTTGTCAAAAGCAGTTCTCCACAGCTTCGTATTTATCAGAACATACACGAGTTCACACAGGTTTgtattaa
- Protein Sequence
- MDIEINLSNCCRTCLRLGCPLTPISAEDKDTVKFSYKLMTCIAEIAWSRIDISPLICDQCIDQLRISYEFRNTCITADETLQKCVKQSQINKIETKDNILFNSKYNCVDSSTRHDSISDLPDEDTNNSEYLHLKHFLDSEEELGKNEVILSENEISRSSTPENTEEPFINHYNQSQTIEIEVQDIQEIIIQAKSDEVEEQNKLILSDGEEYSIQDLTTSTDHTEVEAVEEEEGEEQNHIVHHISAEASEENNHKKQNEENNSEQGVIKTEEVILSQFDKIAGTAVGETILGSEQIIPVSKMHQIIKSTKSTGVQVRPLTPEDKGSTKAPGNPNTCSICGNTYRKRANLKVHMRSHTGEKPFECKYCEKRFHHSSHLKEHIRRHTGEKPFHCNLCSKRFTIRGELTMHMRCHTGEKPFACTVCDRRCLTSSDLKIHMRTHTGEKPYTCENCGKKFSSGYILSSHMKIHTGERPFPCKLCDKSFTQSSHLNVHMKKHTGEKFTCKFCPATFTHSSQLTVHKREHTGKQPYKCIVCNKLCNYSSELQTHMAKHTGQKFSCTICQKQFSTASYLSEHTRVHTGLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01244442;
- 90% Identity
- -
- 80% Identity
- -