Ppte035758.1
Basic Information
- Insect
- Polydrusus pterygomalis
- Gene Symbol
- -
- Assembly
- GCA_963969555.1
- Location
- OZ018378.1:43437199-43453102[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.031 2.6e+03 0.8 0.0 23 47 207 231 202 238 0.85 2 5 0.054 4.5e+03 0.0 0.0 21 52 233 264 229 264 0.81 3 5 7.3e-06 0.61 12.4 0.0 22 44 262 284 258 291 0.91 4 5 0.024 2e+03 1.1 0.1 23 43 319 339 312 348 0.86 5 5 2.1e-06 0.17 14.2 0.2 24 53 348 377 339 378 0.85
Sequence Information
- Coding Sequence
- ATGCAAGAGAAAGATGGTTTTTGCTTACAGTGTAAAAAACCTTTATCAGCACCATCTAATCGATTAGTACAAGATTCCTGTGGACATAAAAAGTGTCGTTCATGTCTTTTAGATGATGTGGAAAACTGTAAACAGTGTTTTGGTTCAGTCATCTTAAGTGAACAAAATGGGGAGAAAATAGATAGTATACCTAAAATAACTGATAATCATACTGCTGTAATCCAGTGCAATGGCAAAGCAAGGCTTAACTGTGATAGAATTTTGGATGAGAGAAAAAGTGATGCTTCCATTTCCAGTAACAAAAAGCAAGATATTAATTTACTTGATCGTGCCAATGAGTCAGTGATTAGAAAAcaagtaaataaagaaaaaattaaaaggttAAGGGAAAAGATTGGAAAAAAGAAGTTAATTGATGTCCCCCCACACATAATTCTAAAGGCTGATCCAGTTTCCTATTTGTGCACTATTTGTAACAAGACTTTTTATACAAAGTCTCATGTAAAATATCATCAGTATTGTGCAGGTGaaacaaagCCATACAAATGCAATGTATGtgaaaaagaatttattttaaaagctcaGCTCCAAGTTCACATGTACAAACATGAAAACGTAAAGCCATTCAAGTGTACTATTTGCCCGAAATCTTTCGGCGAAAAAACGAAGCTCTCGCGGCATATGGTGTTGCATTCATCGGACAAGAAGTATATCTGCCCCGATTGTGCCAAAgcatttaaaagtaaagaatctTTAAGAATCCACTGTTTGATTCACAAAGTCGACAAACCTTTTGCTTGTACAGTTTGCTCGGCGAAGTTTAACAATTCGTCGAATTTAAGGAAACATTTAGTATCACATTCAgaTGAAAAAGCCCATATGTGTGATCAATGTGGAAGAAGGTTCAAATTAAAGTGGGCATTATCAGTACATAGGAAGTCCCATCTGAGAGTGAGGCCCCATTCATGTAACCTGTGTTTTAGGAATTTTGTTAACTTTAAAGATCTACAGAGGCATTCTTTAGTGCATTCAgAATCGAAAGGATACACTTGTGGCATCTGTCATACAAGTTTTCGGCGCAAAGACAACCTACACCGCCATATGAAGAACACGCACCCAGGTAAGAAGGGTGAGGTAATAAAGAATGACTTGAAAGTCGCAGAATTACCAAAAAAATCAGTAGTCATTGATAATCCAAATGCAATAAAGGTGATAACCGCTTCGCCGGCTATAACGAAAAGTATAGCCGAAGCAGTGGTGGCGCCACCACACCAAAATACTGCTAAATCTACTGATTCTAGGCCGACCGGATCTGTCATCAACGGACCAATCAAGCTCGCGTTTAAGACGCCGGCTTTCAAGAGCCATTACAATATTGCGAGAGGTCTTGGTAACACACATCTATACCCTATCTGTATTATCTTGAGGGAGAAGAAAGAGATAGAAACCCATTTTACACCGGGCACATTTTACGCGTCGTTTTCTGACATTATAGAAAATGAGGTTAGAAGTAAATTATAA
- Protein Sequence
- MQEKDGFCLQCKKPLSAPSNRLVQDSCGHKKCRSCLLDDVENCKQCFGSVILSEQNGEKIDSIPKITDNHTAVIQCNGKARLNCDRILDERKSDASISSNKKQDINLLDRANESVIRKQVNKEKIKRLREKIGKKKLIDVPPHIILKADPVSYLCTICNKTFYTKSHVKYHQYCAGETKPYKCNVCEKEFILKAQLQVHMYKHENVKPFKCTICPKSFGEKTKLSRHMVLHSSDKKYICPDCAKAFKSKESLRIHCLIHKVDKPFACTVCSAKFNNSSNLRKHLVSHSDEKAHMCDQCGRRFKLKWALSVHRKSHLRVRPHSCNLCFRNFVNFKDLQRHSLVHSESKGYTCGICHTSFRRKDNLHRHMKNTHPGKKGEVIKNDLKVAELPKKSVVIDNPNAIKVITASPAITKSIAEAVVAPPHQNTAKSTDSRPTGSVINGPIKLAFKTPAFKSHYNIARGLGNTHLYPICIILREKKEIETHFTPGTFYASFSDIIENEVRSKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01241186;
- 90% Identity
- iTF_01241186;
- 80% Identity
- iTF_01241186;