Pcer007953.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010000142.1:657964-674359[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.1 1.7e+04 -2.7 0.0 23 46 210 233 204 241 0.74 2 5 0.27 4.2e+03 -0.7 0.0 23 52 238 267 230 267 0.81 3 5 1.9e-05 0.29 12.6 0.0 21 44 264 287 261 293 0.93 4 5 0.063 9.5e+02 1.3 0.1 23 43 322 342 315 351 0.87 5 5 8.8e-06 0.13 13.7 0.3 24 53 351 380 340 381 0.84
Sequence Information
- Coding Sequence
- ATGCAAGAGAAAGATGGTTTTTGCTTACAGTGTCGAAGGCCTTTATCAGCACCATCTAACCGATTGGTACAAGATTCCTGTGGACATAAAAAGTGCCGTTCATGCCTTTTAGATGACGTAGAAAACTGTAAACAATGTTTTGGTTCAGTCATTTTAAGTGAACAAAATGGAGAGAAAACAGATAGTATACCAAAAATAACTGATAACCATACCGCTGTAATCCAGTGCAATGGCAAAGCAAGGCTTAACTGTGATAGAATTTTGGATGAGGTCCTTGAAAGGAAAAGTGATCCTTCCATTTCCActgataaaaaacaaaatatcaatttactTGATCGTGCCAATGAGTCAGTGATCAGGAAACaagtaaataaagaaaaaataaaaaagttaagagaAAAAGTCGGAAAAAAGAAGTTAATTGATATCCCCTCACATATAATTCTAAAATCTGATCCAGTTTCCTATTTGTGCTCTATTTGTAACAAGACTTTTTATACAAAGTCTCACGTAAAATATCATCAGTATTGTACAGGTGatgCCAAACCATACAAATGCAAAGTTTGTGAaaaggaatttattttaaaagctcaGCTCCAAGTTCATATGTCCAAGCATGAAAACGTAAAGCCATTCAAATGTAGTAATTGCCCAAAATCTTTCAGCGAAAAAACCAAGCTTTCCCGGCATATGGTGTTGCATTCACcagaaaaaaagtatatatgtCCAGATTGTGCCAAAGCATTTAAAAGTAAAGAATCTTTAAGAATTCACTGTTTGATTCATAAAGTTGAAAAGCCGTTTGCTTGTAAACTTTGTTCGGCGAAGTTTAACAATTCATCGAATTTAAGGAAACATTTAGTGTCACATTCagatGAAAAAGCTCATATGTGTGATCAATGTGGAAGAAGGTTCAAATTAAAGTGGGCGTTGTCAGTACATAGGAAGTCCCATCTAAGAGTGAGGCCCCATTCCTGTGACGTGTGCTTTagaaattttgttaattttaaagatttacAGAGGCATTCTTTAGTGCATTCAGAATCAAAAGGATTCACTTGCGGTATCTGCCACACAAGTTTTCGGCGCAAAGACAACCTACACCGCCATATGAAGAACACGCACCCAGGTAAGAAGGGTGAGGTAATAAAGAATGACTTGAAAGTCGCAGCGTTGCCAAAAATATCAGTAGTCATTGATAATCCAAATGCAATAAAGGTGATAACCGCTTCGCCGGCTATAACGAAAAGTATAGCCGAAGCAGTGGTGGCGCCACCACAGCAACATACTGCTAAATCTACTGATTCTAGGCCGACCGGATCTGTCATCAACGGACCAATCAAGCTCGCGTTTAAGACGCCGGCTTTCAAGAGCCATTACAATATTGCGAGagacTGCGACTATATACCGCCGGCTCAAACTACGAAGTCTCTCCCACTAGCAGAATCAGTAGACATAGCACAGAAAATATTATCTTCTAGTGGTGATAATCTTATAGTATCTCGAAGCGTAGACGAGCGTACGTCTAAcgaaatatgtcaaaaaatctTATCCATACCGAGTAAGAGTCCAGAGGAACCTACCCTAAAACCCACAGTACCAGTGCCTACGCCACCTCAACAAAATTTTCCTTCATATTCGAGTACGTTCCATTATGAAACTTCGTTTCAATATGGAAAACACGcgatgattaaaaatattaagtttaagGTGCCAGAACAATATACAaacttatttaaacaaaatactcATAGCGTTACGGATAACATTGGTGATAAAGGTTATGATCATTCAGAGCTAAACGTGTCTTCGCCGGAGTCTAAAGTGTTTTCGGAGCTAAAACCAGTGGCGAATAAAAGTGTTATAGTGAATAATAGTAATCTTAATCCATCTAGTGATATTCACTGGCGTAGGAGAACTTCACAGAATCTAGTGCTTAAGAATTAA
- Protein Sequence
- MQEKDGFCLQCRRPLSAPSNRLVQDSCGHKKCRSCLLDDVENCKQCFGSVILSEQNGEKTDSIPKITDNHTAVIQCNGKARLNCDRILDEVLERKSDPSISTDKKQNINLLDRANESVIRKQVNKEKIKKLREKVGKKKLIDIPSHIILKSDPVSYLCSICNKTFYTKSHVKYHQYCTGDAKPYKCKVCEKEFILKAQLQVHMSKHENVKPFKCSNCPKSFSEKTKLSRHMVLHSPEKKYICPDCAKAFKSKESLRIHCLIHKVEKPFACKLCSAKFNNSSNLRKHLVSHSDEKAHMCDQCGRRFKLKWALSVHRKSHLRVRPHSCDVCFRNFVNFKDLQRHSLVHSESKGFTCGICHTSFRRKDNLHRHMKNTHPGKKGEVIKNDLKVAALPKISVVIDNPNAIKVITASPAITKSIAEAVVAPPQQHTAKSTDSRPTGSVINGPIKLAFKTPAFKSHYNIARDCDYIPPAQTTKSLPLAESVDIAQKILSSSGDNLIVSRSVDERTSNEICQKILSIPSKSPEEPTLKPTVPVPTPPQQNFPSYSSTFHYETSFQYGKHAMIKNIKFKVPEQYTNLFKQNTHSVTDNIGDKGYDHSELNVSSPESKVFSELKPVANKSVIVNNSNLNPSSDIHWRRRTSQNLVLKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01239477;
- 90% Identity
- iTF_01239477;
- 80% Identity
- iTF_01239477;