Pcer037142.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010001247.1:185479-194874[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.4 6.6e+02 2.4 0.0 2 20 272 290 271 294 0.78 2 14 0.91 94 5.1 0.2 7 23 309 325 302 325 0.85 3 14 0.26 27 6.8 0.6 6 21 335 350 335 351 0.95 4 14 8.2 8.5e+02 2.1 0.2 1 19 399 417 399 422 0.71 5 14 1.6e-05 0.0016 20.1 2.2 3 23 482 502 480 502 0.96 6 14 4.6e-06 0.00047 21.7 3.3 1 23 508 530 508 530 0.98 7 14 0.00023 0.024 16.4 0.7 1 23 535 558 535 558 0.94 8 14 3.5e-05 0.0036 19.0 0.6 2 23 579 600 578 600 0.97 9 14 0.0094 0.96 11.3 2.6 1 23 606 629 606 629 0.96 10 14 2.6e-05 0.0027 19.3 4.6 1 23 632 654 632 654 0.98 11 14 6.9e-06 0.00071 21.2 0.9 1 23 662 684 662 684 0.98 12 14 4.5e-06 0.00046 21.8 2.8 1 23 690 712 690 712 0.96 13 14 1.1e-05 0.0011 20.6 1.4 1 23 718 740 718 740 0.99 14 14 0.045 4.6 9.2 4.0 1 23 746 769 746 769 0.98
Sequence Information
- Coding Sequence
- atgcaaaaacataacataaaaatagcAATAActtcttttaataatatttgccGAGCTTGTTTATCAGAAAATGGGGAGCTAGAATGTATTTATGAGGTCACTGTACAAAATGAACAAAAAACAGAACAGCTTGATTTAGTCCAAATACTCAAGAGATATGTTAAAGTAGATGTAAGTCGAGATGACAACAAGCCACAGAAAATATGTAAACATTGCATCACCCTTCTATGccagtcatataatttttttgagaaatgcTTTTGGTCAAATCAACTTTTAGACGCTGCTTTATGTGATAACACAACAACAAGTTTCAGTCCAAAAAGTGAGGTGGAAACATTAGATCATGATTTAGAAGTATTTCTTGAGACTAAACCCAGAAGAAAAAAGGGGGAAAGTATAcaggaaaaaaattacttaagtaTATCTAAAAATGATGATAATGTTGATAGTAAGACAAGAAAAAGAAGGGTTTCCATACAGGAAAAGACCTATTTTAGTGACTCAGGAGATGATGTATTTGCTGAAAGTGGTCCTGATGATAATGATTCTGATTGGGAGCCTTTAGcagatattgttaaaaataatgcaGAAGTTAAACTAGAACACAGAGAAAGATACTCTGAAAATGACTCGATAAAAGAAGAAATATCTGATGATGAATTGACTATTGAACAGAGAATAAGAAAGAAAAAAACCCACGAACCCAAACCCCACGGCAAAAGAAGAGGAAGACCTAGAAAAGTCCAATTAACTGAAAACAAAAAAGACAGTGCAGATCTTGAAGCAATTGAATCTCAAAATAAAGTACTCGAATGTAAACTTTGTGATGAAGTTCTTACTGATATTAACACTGCGATAGACCATTATGATGAACAACATGCCCCCCAAATGGAAACAGACAGGTGTATACTTTGTGACAAACCTAAagtttacaagaagagagataACTTGCTATACCATATGGGGTTACATTCCAAGGATAGTATTAAATGTATACCATGTAGAAAATACTTTAGGAATAAAGAATCTTTTACCAACCATCTCAAAGAGTGCTTTAAAGTAGATAGGACAGCTGCAATTAAGCTTGAGGAATCATTGGAAGAGAATGATTTACaagcTGACACTGTAATAACACCTGTTACCACCCAGCTATCTCAAAAAGTTCTTAAAGAAACCCAATATGACGGAGCGTTCACTTGCCAGTTATGTCAGAAAAAGCTTGGCGAAATCGATCTAGTTATAGAACATTATGAACAGGATCACCTGCAAGATTTACAGTGTATTTTGTGCCTGAGAACATTTACAAAACATGTACCATTGTTCCATTTAGGATTACATTCGAAAAAGAGCCATGTTTGTAGGCCGTGTAGgctgttttttaaaactgaAGAAGAATATAATATTCATAATTCCAAGTACGATCATGATAAATCTTTGGCTTGTAAGATATGTGGAAAAAAGTttactagaaattataaaaagaaTAAACATATGCTAagtcatcttaaagaaaaaaattactctTGTAATAAATGTGGAAAGATGTTTACATATAAAACAAGTTTGGTACGGCACTTTAAGATGCATTTTGGCAAGCGGTTCTTGTGTTCTTCCTGTGGAAATGcatATACTACAAAATTCATGCTACAAAGGCATATTCGCATAATGCATACAAATGTGGATGCAGATGGTAAACCATTACCTAAACctcctCCAAAACCAGTCAACCTTCAATGTGAATTTTGTggagaaatatttaaaacaaagtatGGGTATGGCAGGCATATTAGAAGACATCCTgagtttaaagaatttaaatgcaaaatatGTTCGTTTATGTGTGATACAAGGgaACAATTggatattcacatggaaaacaaacacaacaaaCATACCTGTGATGTCTGTGGTAAGCGGTTTCCATTTGAAAGCGAGTTAAAAACACACCACAGGAAACATGAAGATATGGAATTGGCTAGATTTAGatgtgaAATATGTGGAAAAACAGCCCGTACACAAACTCAGTTGAAAGTTCACTTTAGAATCCAcactggagagcgacctttctCGTGTGACCTGTGCGGAAAATCATTTAAGCAGACGGCGCATCTCAAGgtCCACATGTTTCAGCATACTGGAAAAATGCCTTTCAAATGCGGAATTTGCGATAAATCATTCCCATTCCAACATGTTATGGAAATACATATGCGGACACATACTGgtgagAAACCTTTTCAATGTATGCTGTGTGGTAATGCCTATCACGACCGAACTACCATGCAAAAGCATCAGAAGAAAAAACACCCAGAAATGCCTATAGAAAAAGTTAGTAGAAGCGAGTACAAAATGACTAAATTGATGTAA
- Protein Sequence
- MQKHNIKIAITSFNNICRACLSENGELECIYEVTVQNEQKTEQLDLVQILKRYVKVDVSRDDNKPQKICKHCITLLCQSYNFFEKCFWSNQLLDAALCDNTTTSFSPKSEVETLDHDLEVFLETKPRRKKGESIQEKNYLSISKNDDNVDSKTRKRRVSIQEKTYFSDSGDDVFAESGPDDNDSDWEPLADIVKNNAEVKLEHRERYSENDSIKEEISDDELTIEQRIRKKKTHEPKPHGKRRGRPRKVQLTENKKDSADLEAIESQNKVLECKLCDEVLTDINTAIDHYDEQHAPQMETDRCILCDKPKVYKKRDNLLYHMGLHSKDSIKCIPCRKYFRNKESFTNHLKECFKVDRTAAIKLEESLEENDLQADTVITPVTTQLSQKVLKETQYDGAFTCQLCQKKLGEIDLVIEHYEQDHLQDLQCILCLRTFTKHVPLFHLGLHSKKSHVCRPCRLFFKTEEEYNIHNSKYDHDKSLACKICGKKFTRNYKKNKHMLSHLKEKNYSCNKCGKMFTYKTSLVRHFKMHFGKRFLCSSCGNAYTTKFMLQRHIRIMHTNVDADGKPLPKPPPKPVNLQCEFCGEIFKTKYGYGRHIRRHPEFKEFKCKICSFMCDTREQLDIHMENKHNKHTCDVCGKRFPFESELKTHHRKHEDMELARFRCEICGKTARTQTQLKVHFRIHTGERPFSCDLCGKSFKQTAHLKVHMFQHTGKMPFKCGICDKSFPFQHVMEIHMRTHTGEKPFQCMLCGNAYHDRTTMQKHQKKKHPEMPIEKVSRSEYKMTKLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00196648; iTF_00444425; iTF_01188632;
- 90% Identity
- -
- 80% Identity
- -