Basic Information

Insect: Philopedon plagiatum
Gene Symbol: -
Assembly: GCA_963971165.1
Location: OZ020189.1:11610877-11631803[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 1.1 2.1e+02 5.1 0.2 7 23 313 329 306 329 0.85

2 12 0.89 1.7e+02 5.3 0.5 6 21 339 354 339 355 0.95

3 12 1.9e-05 0.0036 20.0 2.2 3 23 486 506 484 506 0.96

4 12 3.3e-06 0.00064 22.4 3.7 1 23 512 534 512 534 0.98

5 12 0.00027 0.053 16.4 0.7 1 23 539 562 539 562 0.94

6 12 4.1e-05 0.008 19.0 0.6 2 23 583 604 582 604 0.97

7 12 0.011 2.1 11.3 2.6 1 23 610 633 610 633 0.96

8 12 2.7e-05 0.0052 19.5 4.4 1 23 636 658 636 658 0.98

9 12 1.5e-05 0.0028 20.4 0.8 1 23 666 688 666 688 0.98

10 12 5.3e-06 0.001 21.7 2.8 1 23 694 716 694 716 0.96

11 12 9.8e-05 0.019 17.8 1.2 1 23 722 744 722 744 0.99

12 12 0.053 10 9.2 4.0 1 23 750 773 750 773 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	1.1	2.1e+02	5.1	0.2	7	23	313	329	306	329	0.85
2	12	0.89	1.7e+02	5.3	0.5	6	21	339	354	339	355	0.95
3	12	1.9e-05	0.0036	20.0	2.2	3	23	486	506	484	506	0.96
4	12	3.3e-06	0.00064	22.4	3.7	1	23	512	534	512	534	0.98
5	12	0.00027	0.053	16.4	0.7	1	23	539	562	539	562	0.94
6	12	4.1e-05	0.008	19.0	0.6	2	23	583	604	582	604	0.97
7	12	0.011	2.1	11.3	2.6	1	23	610	633	610	633	0.96
8	12	2.7e-05	0.0052	19.5	4.4	1	23	636	658	636	658	0.98
9	12	1.5e-05	0.0028	20.4	0.8	1	23	666	688	666	688	0.98
10	12	5.3e-06	0.001	21.7	2.8	1	23	694	716	694	716	0.96
11	12	9.8e-05	0.019	17.8	1.2	1	23	722	744	722	744	0.99
12	12	0.053	10	9.2	4.0	1	23	750	773	750	773	0.98

Sequence Information

Coding Sequence: atgcaaaaacatgATATAAAAATAGCAATAAACTCTTTTAGCGATATCTGCCGGGCATGTTTAGCTGAAAATGGGGAGCTGGAATCTATTTATGAGGTCTTTGTACAGAATGagcaaaaaacagaaaaacttGATTTAGTTCAAATATTTAAGAGATATGCTAATGTAGAAGTAAATCCAAATGATAATAAGCCACAAAAAGTATGCAAACCATGCATCACACTACTTTGCCAAtcgtacaatttttttgaaaagtgtttCTGGTCTAATCAAGCCTTGGACACTATCCTATGTGACAAGCCAGCTGTGACAAATTTAGATCAAAAATGTGACATTGAACTAGAAAACATAAATTTAGAAGAAGCTGTACTTGATAATAAACCTATAAGACGAAGAAAATCAAAACAGGagaaaaataattctacaaAACCAAAGGATAGCATAGGTGACGATAATGTTAAAAGTAGAACAGGAAGAAAGAGAACTTCGAAGCAAGAGAAGACTTATTTTAGTGACTCAGAAGATGATGCATTTGATGAACATGATCTTGATGATGATTCTGACTGGGAACCGTTGAAAGATAGGACTAAGGATAACTCAGAAGTTAAGATAGAATGTGAAGCAGAGAAGGATTCTGATAAAGAATCTGTAAAAGAAGAAATATCTGATGAAGACTTGGAGACTGAGAAACAGACAaaaaaaagaaaatctcAAGAACCCAAACCACTAGTTAAAAGAAGAGGTAGACCAAGAAAGACCCAATGGACTGAAAGCAAGAAAGATAACGGAGACTTGGAAGCAATCGAATCTCAAAACAAAGTACTCGAATGTAAGCTCTGTGAAGAAGTCCTCCCCGATATTAACACTGCAATAGATCATTATGATGAAACACATGCCCCACAAATGGAAATGGACAGATGCATTCTCTGTGATAAACCAAAGGTTTATAAAAAGAGGGATAATTTGCTATACCATATGGGATTACATTCCAAGGATAGTATAAAGTGTATACCGTGTAGAAAGTATTTTAGAAATAAGGATTTATTTTCTAATCACCTGAAAGAGTGTTTTAAGGTTGACAAGTCAGTTGCTGTTAAACTTGAGGAATCAATTGAAGAGAATGATACAAaacCAGATACTATAAAAGCATCTATTACCGCACAACTATCTcaaaaagttctaaaagaaaCTCAGTATGACGGGGCGTTCACTTGCCAGCTATGTCACAAAAATCTCGGTGAAATCGATGTAGTTATAGAACATTATGAAAAGGACCACTTGGACGATTTGCAATGCATCCTCTGCTTGAGAACCTTCACAAAACATGTACCGTTATTCCACTTGGGCTTGCATTCAAGCAAAAGTCATGTTTGTAGACCCTGTAGATTGTATTTCAAAACTAAAGCAGAGTATGAAATTCACAATTCCAAGTATGACCATGATAAATCTTTGGCATGTAAGATCTGTGGCAAAAAGTTTACTAGAAATTATAAAAAGAACAAACATATGTTGAGTCATCTTAAAGAGAAGAATTATTCTTGTAACAAGTGTGGAAAAACATTCACTTACAAAACGAGTTTGGTGCGACACTTTAAGATGCATTTTGGCAAGCGGTTCTTGTGCTCTTCTTGTGGAAATGcataCACTACAAAATTCATGTTGCAAAGACATATTCGAATTATGCATACAAATGTGGACGCAGATGGTAAACCATTACCCAAACCTCCTCCAAAACCAGTGAACCTTCAATGCGAATTTTGtggagaaatatttaaaactaagtACGGTTATGGGCGGCATATTAGAAGGCATCCCGAATTTAAGGAATTCAAGTGCAAGATTTGTTCGTTTATGTGTGATACAAggGAGCAGCTGGATATTCACATGGAAAACAAACATAACAAACACACTTGTGAGGTCTGTGGGAAGCGGTTTCCATTTGAAAGCGAGTTAAAGACACATCACAGAAGACATGAAGATATGGAAATGGCCAGGTTTAGatGTGAAGTGTGCGGCAAAACAGCACGAACTCAGACTCAGTTGAAAGTTCATTTCAGAATTCACACTGGAGAGCGGCCATTTTCGTGCGACCTTTGCGGTAAATCATTTAAGCAAACGGCTCATCTCAAGgtccACATGTTTCAACACACCGGAAAAATGCCTTTCAAGTGTGGAATTTGCGACAAATCATTTCCATTTCAACACGTCATGGGGATACATATGCGTACACATACTGGAGAAAAACCTTTTCAATGTATGCTCTGTGGAAATGCTTACCACGACCGTACCACCATGCAAAAGCATCAAAAGAAAAAACACCCAGAAATGCCTATAGAAAAAGTTTGTAGGAGCGAGTATAAAATGACTAAACTTACGTAA
Protein Sequence: MQKHDIKIAINSFSDICRACLAENGELESIYEVFVQNEQKTEKLDLVQIFKRYANVEVNPNDNKPQKVCKPCITLLCQSYNFFEKCFWSNQALDTILCDKPAVTNLDQKCDIELENINLEEAVLDNKPIRRRKSKQEKNNSTKPKDSIGDDNVKSRTGRKRTSKQEKTYFSDSEDDAFDEHDLDDDSDWEPLKDRTKDNSEVKIECEAEKDSDKESVKEEISDEDLETEKQTKKRKSQEPKPLVKRRGRPRKTQWTESKKDNGDLEAIESQNKVLECKLCEEVLPDINTAIDHYDETHAPQMEMDRCILCDKPKVYKKRDNLLYHMGLHSKDSIKCIPCRKYFRNKDLFSNHLKECFKVDKSVAVKLEESIEENDTKPDTIKASITAQLSQKVLKETQYDGAFTCQLCHKNLGEIDVVIEHYEKDHLDDLQCILCLRTFTKHVPLFHLGLHSSKSHVCRPCRLYFKTKAEYEIHNSKYDHDKSLACKICGKKFTRNYKKNKHMLSHLKEKNYSCNKCGKTFTYKTSLVRHFKMHFGKRFLCSSCGNAYTTKFMLQRHIRIMHTNVDADGKPLPKPPPKPVNLQCEFCGEIFKTKYGYGRHIRRHPEFKEFKCKICSFMCDTREQLDIHMENKHNKHTCEVCGKRFPFESELKTHHRRHEDMEMARFRCEVCGKTARTQTQLKVHFRIHTGERPFSCDLCGKSFKQTAHLKVHMFQHTGKMPFKCGICDKSFPFQHVMGIHMRTHTGEKPFQCMLCGNAYHDRTTMQKHQKKKHPEMPIEKVCRSEYKMTKLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01239441;
90% Identity: -
80% Identity: -