Basic Information

Insect: Polydrusus cervinus
Gene Symbol: Snai1
Assembly: GCA_935413225.1
Location: CAKXYS010000038.1:696528-702511[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0018 0.19 13.6 0.1 1 23 317 339 317 339 0.94

2 12 2.7e-05 0.0027 19.3 1.6 1 23 347 369 347 369 0.99

3 12 0.00018 0.018 16.7 0.4 2 23 377 398 376 398 0.96

4 12 2.2e-05 0.0023 19.6 1.5 1 23 404 426 404 426 0.98

5 12 0.00029 0.03 16.1 1.2 1 23 433 455 433 455 0.97

6 12 0.00035 0.036 15.8 2.0 1 23 461 483 461 483 0.96

7 12 2.8e-05 0.0029 19.3 0.1 1 23 489 511 489 511 0.98

8 12 1.2e-06 0.00013 23.5 1.2 1 23 517 540 517 540 0.96

9 12 9e-06 0.00092 20.8 0.4 1 23 546 569 546 569 0.96

10 12 7e-05 0.0071 18.0 2.8 1 23 575 597 575 597 0.99

11 12 4e-05 0.0041 18.8 0.4 1 23 603 625 603 625 0.97

12 12 0.00084 0.086 14.6 0.2 1 23 631 655 631 655 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0018	0.19	13.6	0.1	1	23	317	339	317	339	0.94
2	12	2.7e-05	0.0027	19.3	1.6	1	23	347	369	347	369	0.99
3	12	0.00018	0.018	16.7	0.4	2	23	377	398	376	398	0.96
4	12	2.2e-05	0.0023	19.6	1.5	1	23	404	426	404	426	0.98
5	12	0.00029	0.03	16.1	1.2	1	23	433	455	433	455	0.97
6	12	0.00035	0.036	15.8	2.0	1	23	461	483	461	483	0.96
7	12	2.8e-05	0.0029	19.3	0.1	1	23	489	511	489	511	0.98
8	12	1.2e-06	0.00013	23.5	1.2	1	23	517	540	517	540	0.96
9	12	9e-06	0.00092	20.8	0.4	1	23	546	569	546	569	0.96
10	12	7e-05	0.0071	18.0	2.8	1	23	575	597	575	597	0.99
11	12	4e-05	0.0041	18.8	0.4	1	23	603	625	603	625	0.97
12	12	0.00084	0.086	14.6	0.2	1	23	631	655	631	655	0.92

Sequence Information

Coding Sequence: aTGTCAGCCAGTGTCTGTCTTATATGTGATGCAAGCTGTTCTTCAGCCCGGAACTCGGTACAAATATTTAACAAGGATAATTCTGTTCCAAATGAAATAAACCTAGCAACAGTCCTCCAACAATtattaaacaaagaaataagTGAAAACTCAGTTCACTCGCAAATTTTATGCAAGAAATGTTTTAAACTTGCTGATGAATATGATGAATTACAAAGCAGAGTTACTGAAATTAAAAATGAGATCTCAGAGAGCTACCAGAATACTCTGGAAAAAAAGGAGAACCCTCAGGATGCTTTAGAAGGAAAtcaaattaatgaaaatagtGGAAATGTGAAAGAAATACATTCAGAAAGAATTAACGAAAATAGTGTTATGCAAAGCAATGAATTGCCTAAGAAAATTTTGGACATACCTTCTAGTGATGATGAATCTActcaggtTGTTGAAAAACCTCTTCAAACCTTAGAAGATATAGAAATGGCCCTAGTTAAAATACACGGAGAAGACGATGACCACCATGATATAGATATGGAAACAGGTAGCCAATCGTACAATTCCTTTGGCAATTCTGATTCAGAAGATCTGGATTCCCCTACAATTCTACCAGGCAATAAAATAAGATTTGTGGACATAAAAGATGTGAAACTGGAACCACAAGGAAAAGAAGAGTCCACAGCCTCATCCCAGTCCAATGCAATGTATTCTGATTCTAATAaaccaaacattttaaaaaggaaGTCTCTTAATGGAATCTCTTACTCTGATAACATAATCATTCAACAGCCAGTGGATAAGTTTAAGAATACAGATGATGAATCCAATGCACCAATAGTAAGCAGAGATGGCACAATGTATACTTGCCTTTTATGTACTGGAACAGAAACCGTTGCAGGAGAGGGAAAAGCAATAATAGAGCATGTGAAAGACGTTCACCAGGCAAGGTTGTACATTTGCGACGTCTGTGGTATGGATTTTCGCAAGAGAAACTTGCTATCTGCCCACGTAGACGAGCATGTGGCCAATGAAGAGGGCGACTTCCAGTGTGAAGTTTGCAACAGGATTTTTACCAATTTGCGGTTGTTTAGAATACATAGAAGAATGCATCTACCGCAAGCGAAGGCCTGGATTTGTTCGACCTGCGGTAAAAGATACAGCAGCAAAAATTTGTTGGACGAACACGTCAATACACATTTGGGGGTCAGACCGTATGTATGCCGGACTTGCGGTAAAGATTTTGCCAGTAAATACACCTTTAAGGCCCATGAGAAGACCCACGAGAGCCGACCGAGACCTTTTAAatGCATAGAATGTGGAAAGTCGTTCTTAAGTCAGCAAAATCTCACTCAGCATGAAAGAACGCACACGGGTATTAAAGAatttcaatgtcatttatgcaaTAGACAGTTTGGATCAGCTCATAATTTAGAGgTTCACTCTATAGTTCACACGGGCTATAAACCTTACATTTGCGGCCTGTGCGGGAAAGCTTTCGCTAGAAAAGCGGAGATCCGCGACCACGAGAGAACGCACACTGGAGAACGGCCTTACCAGTGTGAATTTTGTGGCGCTACTTTCAGTCAAAGATCCAACTTGCAGTCACATAAAAGAGCTACGCACTATGATGATAAAAGGTATAGATGTGAGgatTGTGGTAAAGGTTTTAAACGCCGCAGATTACTCGACTACCACATAAAGGCCGCCCACACTGGAGAACGGCCTTTTAAGTGCGAAACCTGCGAAGCCACATTCGTCTATCCGGAGCACTTCAAAAAACATAGACGGATACATACCGGCGAAAAACCGTACATGTGCGAGGTTTGTGGTAAGGCTTTTAATTCGAGAGATAACAGGAACGCTCACCGATTCGTCCATTCGGATAAGAAACCCTATGAATGTTTGGTGTGTGGAACTGGGTTTATGAGAAAACCTCTTCTCTATCAGCACATGCAGTCTCAAGGACACCTGAACGATACCATCGTCGTCAATCAACCCAGACTTACCATAGATGATAAAATATCGATGGATGCTGAGAGCCATTTGGTGTCCGTGGAAGAGGTCGTGGAAGGAGGCGAATCGAAAATATTCATAGCGGAAGaTGACGGACATATTATAATTGACGGCCAGAAGTTAACTTTTGCGGAAGAAAGTTCTGATAACGAAGATGGAGAAATCGTAGACGAGATTGAACAGGTTGTGACCACTGAAGACGGTGACTACGAAGAAATATTATCTTCTGAGGCCCTGTCGAGCAGCGAGACACAAATAATAGATACTCCAGACGGTCCTGTACAATTGGTGAAAGTAAGGATACCAAACGAAAACGGCGAAGAGGAGGAAGCTTGGATTAAAATAGTTCCAGAATAA
Protein Sequence: MSASVCLICDASCSSARNSVQIFNKDNSVPNEINLATVLQQLLNKEISENSVHSQILCKKCFKLADEYDELQSRVTEIKNEISESYQNTLEKKENPQDALEGNQINENSGNVKEIHSERINENSVMQSNELPKKILDIPSSDDESTQVVEKPLQTLEDIEMALVKIHGEDDDHHDIDMETGSQSYNSFGNSDSEDLDSPTILPGNKIRFVDIKDVKLEPQGKEESTASSQSNAMYSDSNKPNILKRKSLNGISYSDNIIIQQPVDKFKNTDDESNAPIVSRDGTMYTCLLCTGTETVAGEGKAIIEHVKDVHQARLYICDVCGMDFRKRNLLSAHVDEHVANEEGDFQCEVCNRIFTNLRLFRIHRRMHLPQAKAWICSTCGKRYSSKNLLDEHVNTHLGVRPYVCRTCGKDFASKYTFKAHEKTHESRPRPFKCIECGKSFLSQQNLTQHERTHTGIKEFQCHLCNRQFGSAHNLEVHSIVHTGYKPYICGLCGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYRCEDCGKGFKRRRLLDYHIKAAHTGERPFKCETCEATFVYPEHFKKHRRIHTGEKPYMCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGTGFMRKPLLYQHMQSQGHLNDTIVVNQPRLTIDDKISMDAESHLVSVEEVVEGGESKIFIAEDDGHIIIDGQKLTFAEESSDNEDGEIVDEIEQVVTTEDGDYEEILSSEALSSSETQIIDTPDGPVQLVKVRIPNENGEEEEAWIKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00196570;
90% Identity: iTF_00196570;
80% Identity: -