Basic Information

Insect: Barypeithes pellucidus
Gene Symbol: Snai1
Assembly: GCA_963991005.1
Location: OZ022564.1:52499263-52506334[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0029 0.26 13.1 0.1 1 23 323 345 323 345 0.94

2 12 3.2e-05 0.0028 19.3 1.6 1 23 353 375 353 375 0.99

3 12 0.00066 0.059 15.2 0.3 3 23 384 404 382 404 0.96

4 12 5.5e-06 0.00049 21.7 0.7 1 23 410 432 410 432 0.99

5 12 1.8e-05 0.0016 20.1 1.6 1 23 439 461 439 461 0.99

6 12 0.00042 0.038 15.8 2.0 1 23 467 489 467 489 0.96

7 12 3.3e-05 0.003 19.3 0.1 1 23 495 517 495 517 0.98

8 12 1.5e-06 0.00013 23.5 1.2 1 23 523 546 523 546 0.96

9 12 1.1e-05 0.00096 20.8 0.4 1 23 552 575 552 575 0.96

10 12 8.3e-05 0.0074 18.0 2.8 1 23 581 603 581 603 0.99

11 12 4.7e-05 0.0042 18.8 0.4 1 23 609 631 609 631 0.97

12 12 0.0027 0.24 13.2 0.1 1 23 637 661 637 661 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0029	0.26	13.1	0.1	1	23	323	345	323	345	0.94
2	12	3.2e-05	0.0028	19.3	1.6	1	23	353	375	353	375	0.99
3	12	0.00066	0.059	15.2	0.3	3	23	384	404	382	404	0.96
4	12	5.5e-06	0.00049	21.7	0.7	1	23	410	432	410	432	0.99
5	12	1.8e-05	0.0016	20.1	1.6	1	23	439	461	439	461	0.99
6	12	0.00042	0.038	15.8	2.0	1	23	467	489	467	489	0.96
7	12	3.3e-05	0.003	19.3	0.1	1	23	495	517	495	517	0.98
8	12	1.5e-06	0.00013	23.5	1.2	1	23	523	546	523	546	0.96
9	12	1.1e-05	0.00096	20.8	0.4	1	23	552	575	552	575	0.96
10	12	8.3e-05	0.0074	18.0	2.8	1	23	581	603	581	603	0.99
11	12	4.7e-05	0.0042	18.8	0.4	1	23	609	631	609	631	0.97
12	12	0.0027	0.24	13.2	0.1	1	23	637	661	637	661	0.92

Sequence Information

Coding Sequence: ATGGCTGCAAATGCAAGTGCCAGCGTCTGTCTTATATGTGACGCAAGCTGCTCTTCAGTTAGAAACTCAGTTCCGATATTCAACAAAGATAATTATGTTCCAAATGAAATAAACCTGCCGACAGTCCTGCAACAATTGTTGGACAGGGACATAAGTGGCAACTCTGTCCACTCTCAGATTCTATGCAAGAAATGTTTTAAACTCGCCGATGAATACGACGAATTACAGAACAGAGTCAACGAAATTAAAAGGGAGATTTCAGAAAACTACCGGAATACTCTGGAGAAGAAGGAGAATCAACAGGATGTTCAAAATTCGGAAGGAAATCGCATTAAAGATACTAGTAGCAATGCGAAGGAGATACATCTGGAAAGAATTAACGAAAGTAGTGTTATGCAAAGCAATGAGTTACCTAAGAAAATTTTGGATATACCTTCCAGTGATGATGAATCAACACAGgtTATTGAAAAGCCTCTTCAAACTTTGGAAGACATCGAGATGGCCCTGGTTAAAATACATGGAGATGATGGAAATCATGAAATAGATATGGAAACGGGTAGCCAATCTTTCCATTCTTTCGGTAATTCTGATTCAGAAGACAACATGGACTCTCCTTCAATTGTACcagGAAGTAACATTAAGTTTGTTGACATAAAGGAAGTAAAACTAGAGCCACAAGGAAAAGAGGAGATGACAACATCTTCTCAATCCAGTTCGATGTTTTCTGAATCCACCAAACCGAACATTTTGAAGAGGAAGACCCTAAATGGAATCTCTTATTCAGATAACATAATCATTCAACAGCCAGTGGATAAGTTTAAGAATGCCGATGATGAATTCAACGCCCCCATTGTTAGTAGGGAAGATGGTCTGTACACTTGTCTGTTGTGTACCGGAACTGAAACGGTCGCGGGGGAGGGAAAAGCGATAATAGAACACGTCAGAGACGTGCACCAGGCGCGGTTATACATTTGTGACGTCTGTGGTCTTGATTTTCGCAAAAGGAACTTACTATCCGCCCACGTGGACGAGCACGTAGCCAATGAAGAGGGAGATTTCCAGTGTGAAGTTTGCAATAGGATATTTACCAACTTGAGGTTATTCAGAATACATAGAAGAATGCATTTACCGCAAGCGAAGGCGTGGATTTGTTCGAGCTGCGGCAAGAGATACAGCAGCAAGAACTTGCTGGACGAACATGTCAATACCCATTTGGGGGTGAGGCCGTATGTATGCGGGACATGTGGTAAAGATTTTGCCAGTAAATATACGTTTAAGGCCCATGAAAGAACCCACGAGAGCAGACCGAGACCTTTTAAATGCATGGAATGTGGCAAGTCGTTCTTAAGTCAACAAAATCTCACGCAGCACGAAAGAACTCACACCGGCATTAAAGAATTCCAATGTCACCTTTGCAATAGGCAGTTTGGATCGGCTCACAATTTAGAGGTCCACTCGATAGTGCACACGGGCTATAAGCCCTACATTTGCGGCTTGTGCGGTAAGGCCTTCGCTAGAAAAGCGGAGATCCGCGACCACGAGCGAACGCACACGGGAGAACGGCCTTACCAGTGCGAATTTTGCGGCGCCACGTTCAGCCAACGATCGAATCTGCAGTCGCATAAGAGAGCGACACACTATGACGATAAACGGTATAGGTGTGAGGATTGCGGTAAAGGTTTTAAACGTCGAAGATTACTGGACTACCACATAAAGGCGGCCCACACCGGAGAAAGGCCTTTCAAGTGCGAGACGTGCGAGGCCACCTTCGTATATCCGGAACACTTTAAGAAACACAGACGGATACACACCGGCGAGAAACCGTACATGTGCGAGGTGTGTGGTAAGGCCTTCAACTCCAGAGACAACCGAAACGCGCACCGATTCGTCCATTCGGACAAGAAGCCCTACGAATGTCTGGTGTGTGGCGTGGGCTTTATGAGGAAGCCGCTTCTCTATCAACACATGCAGTCCCAAGGCCATCTGAACGATACCATCGTTGTGAATCAACCGAGACTTACCATAGACGATAAGATATCGATGGACGCAGAAAGCCATTTGGTTTCCGTTGAGGAGGTAGAGGGAGGTGAATCGAAAATATTCCTAACAGGAGaggaAGGACATATTATAATCGACGGTCAGAAGGTGACTTTCGCGGAAGAAAGTTCCGACAATGACGAGGGAGAAGTGATTGACGAAATTGAACAGGTCGTGACCACGGAGGATGGCGACTACGAAGAAATATTATCGTCCGAGGCCATATCGAGTAGCGAGACCCAAATAATCGACACTCCGGACGGTCCCGTTCAGTTAGTTAAAGTGAGAATACCCAACGAGAACGGCGAAGAGGAAGAGGCGTGGATAAAAATCGTgccggaataa
Protein Sequence: MAANASASVCLICDASCSSVRNSVPIFNKDNYVPNEINLPTVLQQLLDRDISGNSVHSQILCKKCFKLADEYDELQNRVNEIKREISENYRNTLEKKENQQDVQNSEGNRIKDTSSNAKEIHLERINESSVMQSNELPKKILDIPSSDDESTQVIEKPLQTLEDIEMALVKIHGDDGNHEIDMETGSQSFHSFGNSDSEDNMDSPSIVPGSNIKFVDIKEVKLEPQGKEEMTTSSQSSSMFSESTKPNILKRKTLNGISYSDNIIIQQPVDKFKNADDEFNAPIVSREDGLYTCLLCTGTETVAGEGKAIIEHVRDVHQARLYICDVCGLDFRKRNLLSAHVDEHVANEEGDFQCEVCNRIFTNLRLFRIHRRMHLPQAKAWICSSCGKRYSSKNLLDEHVNTHLGVRPYVCGTCGKDFASKYTFKAHERTHESRPRPFKCMECGKSFLSQQNLTQHERTHTGIKEFQCHLCNRQFGSAHNLEVHSIVHTGYKPYICGLCGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYRCEDCGKGFKRRRLLDYHIKAAHTGERPFKCETCEATFVYPEHFKKHRRIHTGEKPYMCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGVGFMRKPLLYQHMQSQGHLNDTIVVNQPRLTIDDKISMDAESHLVSVEEVEGGESKIFLTGEEGHIIIDGQKVTFAEESSDNDEGEVIDEIEQVVTTEDGDYEEILSSEAISSSETQIIDTPDGPVQLVKVRIPNENGEEEEAWIKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01239382; iTF_01244448; iTF_00444385; iTF_01188573;
90% Identity: iTF_01239382;
80% Identity: -