Pcer042778.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010002117.1:495775-497574[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-07 1.5e-05 25.9 0.0 2 39 19 56 18 59 0.92
Sequence Information
- Coding Sequence
- ATGGTGCGTCACTACCAGAAAAAAGTGGGTGGCCGCACTTATAGGAACTACACTGATGCAACCATTGAAGAAGCATTACAAAAAATTGTTGATGAACAATGGTCAATTCGCAGAGCTGCAGACACGTACAAAATATCATTTGGCACTTTATGCAACAGATACAATGGCCTTCATATAAGGTCTGTGGGTCGACCAACCCTTTTTTCTAATGAAGAGGAGCTCCAGTTTATAGAATCTGCTGCTATTTGCGGTGAATGGGGCTTTCCTTTGAGTAAAGCGGATATCCAAGCACTTGCAAAATCATGCTTAGATCAGAAGGGTGCAATTATTTCTTGGTTGAAAGAGAACAAACCAGGAATAGACTGGGTCGACCAATTACTCCTACGACACAAATCAGCAGTGGTTAAAAGAGTTGCCGCAAACATCGAAAGGGCCAGAGCAACAGTCAGCGAGACCAGTCTAAAGGAATATTTTAAGAACAttgaaaaaacaattaaagggGTACCACCTGCTAATAGTTTCAATTACGACGAGACAAACTTCTCCAATGACCCTGGACGAAGCTTCAAAATTTACCGGCGAGGAGTGAAATATCCGGAGCAGATTTGCAATTATAGCAAGTCAGCAACAACAGTGATGATGTGTGGTTCTGCATCCGGTGTTTTGCTGCCTCCATATATTGTATACAGAGCTGAGAAAATGTGGAACACCTGGACAGAGAATGGTCCCAAAGGCTTTCCTTGCTGCAATCAAAGATGTTGCTCTGCTGGCGCGAGATACAATAGGACACGACATGGATGGATGGAAGCAGTCACATTCCGTGATTGGTTTATGAACAGCTTTCTACCTCATGCGAAAACCTTACAAGGAAAAAGAGTACTCATCGGAGACAATCTAGCTGCACATTTTTCAGACGACGTGTTGAAAGCATGTGAGCAGAACAACATTGATTTTGTATGCCTTGTGCCAAATTCAACCCATTTGACGCAACCACTCGATGTCTGTTTTTTCCGTCCTATGAAGAATGCATGGCGCTCTACCCTGAAAAAATGGAAAGACAAAAACCCTCGAATATCATCTTTGCCCAAAGAAGAATTTCCACGGCTTCTTCAAAGTTCGCTGCTAGCAATGGACAATCCTGAATCGGCTAAAGAACCAGGTGCGATATCTCGAGATTTAATAAGTGGATTCGCTGCCACAGGAATCGTTCCTTTTAATCCGGAGAGGGTATTGTGCAAGATACCTGGATTTCAGCCAGAAGCACCAACTAAGCAAATCAACGAAAATTTAATAAGCTTTTTGAAACGTCAGAGATTTGACAAAGATGGCACTACACCAAACAGACAAAAAAGGAAAATGTTGAAAGTTGTGCCTGGGGTCAGCGTCGTTCATGTATCGGCCGAGAACGACGAGCTGATAGATCAAGAATCTCGTTCTCCATCTCCGGAAACAACGGAAGAAATTGAGGAAGAGCAGGGTTGTTCTAGCCAGAACCAAGAAATCGAGGACAATTCTACCCAGGACGTGAGTGCCAAAGTTGGGGACTTCGTAATTGTCAATATGAGTGTAGAAGGCTCTAACTTATCGAAAAAGTTTGTAGGCTGTGTTACAGAGGTTGATTCTTCGAACGACCTAGTGATTCGCTTCATTAGGGAACGAGTggggaaaaaaacaaatttcttcGTGTTCCCTGATGTGCCAGACGAAAGCATCATCCAAACGACTGAAGTTATTGCTGTAATAAAGCCCTTCTCTTCGAGGAGGGGAtcgtattttttcaataatatcgaTCTTaactaa
- Protein Sequence
- MVRHYQKKVGGRTYRNYTDATIEEALQKIVDEQWSIRRAADTYKISFGTLCNRYNGLHIRSVGRPTLFSNEEELQFIESAAICGEWGFPLSKADIQALAKSCLDQKGAIISWLKENKPGIDWVDQLLLRHKSAVVKRVAANIERARATVSETSLKEYFKNIEKTIKGVPPANSFNYDETNFSNDPGRSFKIYRRGVKYPEQICNYSKSATTVMMCGSASGVLLPPYIVYRAEKMWNTWTENGPKGFPCCNQRCCSAGARYNRTRHGWMEAVTFRDWFMNSFLPHAKTLQGKRVLIGDNLAAHFSDDVLKACEQNNIDFVCLVPNSTHLTQPLDVCFFRPMKNAWRSTLKKWKDKNPRISSLPKEEFPRLLQSSLLAMDNPESAKEPGAISRDLISGFAATGIVPFNPERVLCKIPGFQPEAPTKQINENLISFLKRQRFDKDGTTPNRQKRKMLKVVPGVSVVHVSAENDELIDQESRSPSPETTEEIEEEQGCSSQNQEIEDNSTQDVSAKVGDFVIVNMSVEGSNLSKKFVGCVTEVDSSNDLVIRFIRERVGKKTNFFVFPDVPDESIIQTTEVIAVIKPFSSRRGSYFFNNIDLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01242736;
- 90% Identity
- iTF_01238721;
- 80% Identity
- -