Pcer019971.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010000468.1:138714-139438[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-08 2.2e-06 28.6 0.0 3 42 16 56 14 58 0.92
Sequence Information
- Coding Sequence
- ATGTCGcgttataaaagaaaaactactcGTCAGTCATGGGATtcagaaagcatgaaaaatgcaataattgaaGTCCTAGAGCATAGGATGGGATATAAAAAGGCCTCTCAAAGTTTTAATGTTCCCCAATCAACATTAGAAGATCGTGTCAAAAAAGCAAGAAATAGTAACTCTGTTGAAGAAGCTAGTAAGAAAGGTCTGGGTCGATACAAGACTGTGTTTAGCGTTGCCCAAGAAGATGAGCTAgtttcgcatattttacaaatggAAAGTAGACTATTCGGATTTACTTTATCAGAACTAAGAATTCTTGCTTACGAACTAGCCGTACAGAATAACATCACccacaattttaataaagaaaagaaaatggcTGGGAAGTGTTGGCTTTATTCGTTTTTGTCGCGACATCCAAAACTTCGATTGAGAACTCCAGAAGCTACTTCAATTGGACGAGCTATAGGATTTAACCGAGCAGCAGTAGAAAAGTTTTTTACTCTATTAACACAAGTTTATGACCAACACAAGTTTCCTCCTGAGCGCATATGGAATGTTGATGAAACGGGAATTACCACTGTCCCCAACAAGCAgtctaaagttatttctatgagAGGATGA
- Protein Sequence
- MSRYKRKTTRQSWDSESMKNAIIEVLEHRMGYKKASQSFNVPQSTLEDRVKKARNSNSVEEASKKGLGRYKTVFSVAQEDELVSHILQMESRLFGFTLSELRILAYELAVQNNITHNFNKEKKMAGKCWLYSFLSRHPKLRLRTPEATSIGRAIGFNRAAVEKFFTLLTQVYDQHKFPPERIWNVDETGITTVPNKQSKVISMRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01187411;
- 90% Identity
- iTF_01238754;
- 80% Identity
- iTF_01238726; iTF_01238835;