Ppla034255.1
Basic Information
- Insect
- Philopedon plagiatum
- Gene Symbol
- -
- Assembly
- GCA_963971165.1
- Location
- OZ020191.1:53611603-53613561[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3e-08 3.5e-06 29.0 0.0 5 41 18 55 15 58 0.89
Sequence Information
- Coding Sequence
- ATGTCGCactataaaagaaaaacaactcGTCAGTCATGGGATCAGAAAAGCATGAAAGGAGCAATTATAGAAGTACTAGAACATAGAATGGGATATAAAAAGGCAGCTCAAGCTTTTAACATTCCCCAGTCAACCTTAGAAGATCgtgttaaaaaagctagaaatGGCGATTCTGTCGAAGAAGCTAGTAAGAAAGgTCTAGGTCGATACAAGCCTGTATTTAACGCTGGTCAAGAGGAAGACCTGGTTTCGCATATTTTACATATGGAAGGCAGACTTTTTGGGTTCACATTATCTGAACTAAGAATTCTTGCTTATGAACTAGCGGTAAGAAATAACCTAAACCACAACTTTAGCAAGGAAAAAAAAATGGCTGGCAAAACTTGGCTTTATTCGTTTTTGTCAAGACATCCAAATCTTCGATTGAGAACACCTGAAGCTACATCGATTGGGTTTAACCGGACCGCAGTAGTAGTTATCTTTCACCGttctcaagatgtatcagtgcagtga
- Protein Sequence
- MSHYKRKTTRQSWDQKSMKGAIIEVLEHRMGYKKAAQAFNIPQSTLEDRVKKARNGDSVEEASKKGLGRYKPVFNAGQEEDLVSHILHMEGRLFGFTLSELRILAYELAVRNNLNHNFSKEKKMAGKTWLYSFLSRHPNLRLRTPEATSIGFNRTAVVVIFHRSQDVSVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01187588; iTF_01187406; iTF_01187408; iTF_01238754; iTF_01238725; iTF_01238757; iTF_01238726; iTF_01238835; iTF_01238740; iTF_01238741; iTF_01238742; iTF_01238743; iTF_01238744; iTF_01238745; iTF_01238746; iTF_01238747; iTF_01238748; iTF_01238749; iTF_01238750; iTF_01238751; iTF_01238681; iTF_01240319;
- 90% Identity
- -
- 80% Identity
- -