Pcer005443.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Polydrusus cervinus
Gene Symbol
PGBD3
Assembly
GCA_935413225.1
Location
CAKXYS010000101.1:194805-201116[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.6e-10 3.1e-08 34.5 0.0 2 37 16 50 15 56 0.92

Sequence Information

Coding Sequence
ATGCCGAAAGTAAAAAGTAATTCCAAATATTGCAAATCCTACAATGATGATGCTCTTCAAAAGGCTATTGAAGCTGTCACCAATGGTATGGCTAAAGCCAAAGCAGCAACAGAATATAATGTACCACGGCAGACCATCCAGTACCGACTgggagaaaaatttaaaaaagccaCACATGGACCTGTTCCGATTTTGACAAGTGACGAAGAAAGCCTCTTGGAGCAATGGATTTTGGAAAGTCACACCAAAGGATTTCCACGTAGGCGAGATGATGTTCAGGCAGCTGTGAAATCGTTTTTGGACAAAAACCCTAGGCcaaatccttttaaaaataacaacccAGGTAAACATTGGTACCAGGCCTTTTTAAAACGACATCCTTTGCTCGTTCATAGGATTCCCGAAGGCGTTACACCGTCAAGTGCGAACATCTCTGAAAACGATATTAAAAGTTGGTTTTTAAAAGTAGAAAGTTATCTTCAAGAAAAGGACTTAGCTGAAGTTCTGCATGATTCTACAAGAATTTTTAATGGCGATGAAACTTGCTTCTTGTTATGCCCCAAGGAGGGCAAAGTATTAGCTCCAAAGGGAACCAAAAATGCATATGAAGTGGATGGAGGGGCAGCTAAATCCAATCTTACTGTGATGTTCACGTTTTCAGCTTCTGGTTCCATGGCACCACCCATGATTATTTACCCATACAAACGCATTCCAGCGAGCATTGCAGCTAGTGTTCCAAATGATTGGGGTATAGGTACGAGCGATAATGGGTGGATGAAGTCTGAGTTGTTTTACgaatatatttcaaatatatttaataaatatctcGAGagaagtaatattaaaaaacctgTTATCCTCTTTGTGGATGGCCACAAGACCCATTTAACTTATGAAATAAGTACTTTatgcacaaaattaaaaataattctggtTGCATTGTATCCAAATGCAACCAGAATTTTGCAACCAGCGGACGTTTCGTGTTTTAAGCCACTCAAAACACGATGGAAGCAAGCAGTACTAGAGTGGAGAAGGCATAATCCCCTAgttcaattaaaaaaagaacattttgcCCCCATATTAAATGAAGCTATTAAAGGTTTAAAAGATGTTACCATTATAAACGGTTTTAGGGCCTGTGGCATATTTCCATGGAACCCTAATGCCATAGATTTTACCAAGTGCCTGGGGAAAGGTAAAAAAGGGAAGGAAAATAAAGAAAGTCAACAATCCCAATCCAATTTtagtaacaacataaatttaAAGTACGAAGATTTTTGCAAAATTGTGGGACAAAACAAACTTGATGAATTACAAGCATATATTCAGCATTCACCAGAACAAGATTCTGATGAGGACTCACAAAGTGAAAACTTCAAAATATTATTCAACATATACAATGCCTTTAAATCGCTGAAAAGCGCACAAGTTGTAGTAGAAGATCAAAATGAGTCTATTACTGAAATTGATTATAGCTTATCTAATGAAGACGAATTTACAGAAGAAGACTTAGAAAACATGCCTATCATAATTGATATTTATAACGGCGAAGAACATGATACAGAACTAGAAAGAGTTATTCAAATTGACAAACCAATGGTGAACGAGTTATCTTGCTCTAATGTTCCGGTTGAAATCCTTCAAGAAGACAACActgaatatataattttaaagaatctGAAACCgaccataaataaaaattctgttAGTGAGCCATCGTATTCTGATTTTCCGAATGATATCCGACCAAAAGAAAATACTAAAGATACAATTATTATAGAAGCTCTTGAACATACTATAATTAAGGATTCTGTGTCTGAGCCGGCATGCTCTAATTTCTTGGTAAAAATTCCACAAGAGAAAGGCAAcgctaaacaaaaattaaaagataatgAACAGACCACAAATGACAAGCCTGTGTCCAATAATTTAGATGAGACTTTAGAAAAAAACCAATCGGTTATGAGTGACAATGACCATAAACCCTGTTCTCCAATGACTGCAACTCTAAACGATTGCCTGATGTGGCCTAAAACTCctgaacgaaaaaataaaagaaatgttgAAAGATTACCATTTGTAATATCATccagtggatttaaaaaaatatgtgaagATAAGCAGAAAGAAAAcgataaaaaagaaaaagaaaaagaagaaagagTACATAAGAGAGAACAAAAGAATATCGCTAACCAAAAGTTAAAGCAGGTAAAAATGACACTTAAGTCCGAGCAGGTAAAAAAGTCACTTACTGCTAAGAAAAATGAAATCACCCAACaggagaaaaatattattcagcCAAAGAAATTGGAAAACCTTAGTTGCAATGAAAATATTCAAGTGGAAAAGATGATCATTAGAACAAATACGGGGAAAACTTTAAGTTCCCTCGAAGATATTGATAAAGAGAACGGCCAAGCCAAAACAAAGCCAAAGCATGTGAAAAACTTTAATCTAATCGATGATTTTAGTCAACCATCGACTTCTGAAGCAGCTCCCCTAAATAATTTTATCCaatttgtaATGGACAGTGGTGTGAGAGTGGGGAATTTTGACGACCTAGATGAAGATGATGATATTCCAGATGACGTGCCACTCTTAACATTTGTCaagaaaaacgttaaaaattttaagtggcTGCAACAGATGGACTTGTTTCGTAATGACGACATTTTATTTCCACAATGTGACACCTCGAAATATAGGGAAATGACGCCAATAGAATTGTTTGAACTTTTTATAACACATGATATTATTGGCTTCTTAGTAGAAGAAAGTAACAAATATGCTTTATACAAAAATTGTCCAAATCCTTGTATAACACAGAGCGAAATGAGGTGCTTTTTAGCAATATTGATTGTATCAGGGTATGATAAGAAGCcgtcaaaaaaaagttactgggATTCAGGGGATGATTTAAGAAATACTGCAGTATATAAAGCAATGCGAAGGGATAGATTTATGGAAATAATGAAGTTCTTACATTGTGCGGATAACACCAATCTCAAAGAGAATGACAAGATGGCTAAATTGCGACCACTTGtcgacaaaataaaacaaaacttttttcttcATTTTGTTCCCCAAATGGAAGTTTCGTACGATGAAAGTATGATTGAATATTTTGGACGTCATGGCTGCAAGCAATTTATACGGGGAAAACCGATTAGATTCGGGTATAAATGTTGGTGTATGAATTCAAAACAGGGATACTTGATCAACTTTGAAATTTATCAGGGCACTATACCAAATTCTAACCCGGAACACCAAAAAGAATATGGAAAAGCTATAGCACCACTAATTCAACTAATTGATGCTCTTCCAGATCAAAAAAGAACTTTGCCATATaggttttattttgacaatttatttacttctataaaatttttatcatACCTTCAAAAGCGCCAATATAATGTTACTGGAACTATTAGGGAAAACCGACTTCCTAAAAATTGTCCCATTGCTGATGTTAAAAGTATGAAAAAGACATAA
Protein Sequence
MPKVKSNSKYCKSYNDDALQKAIEAVTNGMAKAKAATEYNVPRQTIQYRLGEKFKKATHGPVPILTSDEESLLEQWILESHTKGFPRRRDDVQAAVKSFLDKNPRPNPFKNNNPGKHWYQAFLKRHPLLVHRIPEGVTPSSANISENDIKSWFLKVESYLQEKDLAEVLHDSTRIFNGDETCFLLCPKEGKVLAPKGTKNAYEVDGGAAKSNLTVMFTFSASGSMAPPMIIYPYKRIPASIAASVPNDWGIGTSDNGWMKSELFYEYISNIFNKYLERSNIKKPVILFVDGHKTHLTYEISTLCTKLKIILVALYPNATRILQPADVSCFKPLKTRWKQAVLEWRRHNPLVQLKKEHFAPILNEAIKGLKDVTIINGFRACGIFPWNPNAIDFTKCLGKGKKGKENKESQQSQSNFSNNINLKYEDFCKIVGQNKLDELQAYIQHSPEQDSDEDSQSENFKILFNIYNAFKSLKSAQVVVEDQNESITEIDYSLSNEDEFTEEDLENMPIIIDIYNGEEHDTELERVIQIDKPMVNELSCSNVPVEILQEDNTEYIILKNLKPTINKNSVSEPSYSDFPNDIRPKENTKDTIIIEALEHTIIKDSVSEPACSNFLVKIPQEKGNAKQKLKDNEQTTNDKPVSNNLDETLEKNQSVMSDNDHKPCSPMTATLNDCLMWPKTPERKNKRNVERLPFVISSSGFKKICEDKQKENDKKEKEKEERVHKREQKNIANQKLKQVKMTLKSEQVKKSLTAKKNEITQQEKNIIQPKKLENLSCNENIQVEKMIIRTNTGKTLSSLEDIDKENGQAKTKPKHVKNFNLIDDFSQPSTSEAAPLNNFIQFVMDSGVRVGNFDDLDEDDDIPDDVPLLTFVKKNVKNFKWLQQMDLFRNDDILFPQCDTSKYREMTPIELFELFITHDIIGFLVEESNKYALYKNCPNPCITQSEMRCFLAILIVSGYDKKPSKKSYWDSGDDLRNTAVYKAMRRDRFMEIMKFLHCADNTNLKENDKMAKLRPLVDKIKQNFFLHFVPQMEVSYDESMIEYFGRHGCKQFIRGKPIRFGYKCWCMNSKQGYLINFEIYQGTIPNSNPEHQKEYGKAIAPLIQLIDALPDQKRTLPYRFYFDNLFTSIKFLSYLQKRQYNVTGTIRENRLPKNCPIADVKSMKKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01238572;
90% Identity
-
80% Identity
-