Pcer039632.1
Basic Information
- Insect
- Polydrusus cervinus
- Gene Symbol
- -
- Assembly
- GCA_935413225.1
- Location
- CAKXYS010001522.1:6162-20043[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-10 2.5e-08 34.8 0.0 2 37 16 50 15 56 0.92
Sequence Information
- Coding Sequence
- ATGCCGAAAGTAAAAAGTAATTCCAAATATTGCAAATCCTACAATGATGATGCTCTTCAAAAGGCTATTGAAGCTGTCACCAATGGTATGGCTAAAGCCAAAGCAGCAACAGAATATAATGTACCACGGCAGACCATCCAGTACCGACTgggagaaaaatttaaaaaagccaCACATGGACCTGTTCCGATTTTGACAAGTGACGAAGAAAGCCTCTTGGAGCAATGGATTTTGGAAAGTCACACCAAAGGATTTCCACGTAGGCGAGATGATGTTCAGGCAGCTGTGAAATCGTTTTTGGACAAAAACCCTAGGCcaaatccttttaaaaataacaacccAGGTAAACATTGGTACCAGGCCTTTTTAAAACGACATCCTTTGCTCGTTCATAGGATTCCCGAAGGCGTTACACCGTCAAGTGCGAACATCTCTGAAAACGATATTAAAAGTTGGTTTTTAAAAGTAGAAAGTTATCTTCAAGAAAAGGACTTAGCTGAAGTTCTGCATGATTCTACAAGAATTTTTAATGGCGATGAAACTTGCTTCTTGTTATGCCCCAAGGAGGGCAAAGTATTAGCTCCAAAGGGAACCAAAAATGCATATGAAGTGGATGGAGGGGCAGCTAAATCCAATCTTACTGTGATGTTCACGTTTTCAGCTTCTGGTTCCATGGCACCACCCATGATTATTTACCCATACAAACGCATTCCAGCGAGCATTGCAGCTAGTGTTCCAAATGATTGGGGTATAGGTACGAGCGATAATGGGTGGATGAAGTCTGAGTTGTTTTACgaatatatttcaaatatatttaataaatatctcGAGagaagtaatattaaaaaacctgTTATCCTCTTTGTGGATGGCCACAAGACCCATTTAACTTATGAAATAAGTACTTTatgcacaaaattaaaaataattctggtTGCATTGTATCCAAATGCAACCAGAATTTTGCAACCAGCGGACGTTTCGTGTTTTAAGCCACTCAAAACACGATGGAAGCAAGCAGTACTAGAGTGGAGAAGGCATAATCCCCTAgttcaattaaaaaaagaacattttgcCCCCATATTAAATGAAGCTATTAAAGGTTTAAAAGATGTTACCATTATAAACGGTTTTAGGGCCTGTGGCATATTTCCATGGAACCCTAATGCCATAGATTTTACCAAGTGCCTGGGGAAAGGTAAAAAAGGGAAGGAAAATAAAGAAAGTCAACAATCCCAATCCAATTTtagtaacaacataaatttaAAGTACGAAGATTTTTGCAAAATTGTGGGACAAAACAAACTTGATGAATTACAAGCATATATTCAGCATTCACCAGAACAAGATTCTGATGAGGACTCACAAAGTGAAAACTTCAAAATATTATTCAACATATACAATGCCTTTAAATCGCTGAAAAGCGCACAAGTTGTAGTAGAAGATCAAAATGAGTCTATTACTGAAATTGATTATAGCTTATCTAATGAAGACGAATTTACAGAAGAAGACTTAGAAAACATGCCTATCATAATTGATATTTATAACGGCGAAGAACATGATACAGAACTAGAAAGAGTTATTCAAATTGACAAACCAATGGTGAACGAGTTATCTTGCTCTAATGTTCCGGTTGAAATCCTTCAAGAAGACAACActgaatatataattttaaagaatctGAAACCgaccataaataaaaattctgttAGTGAGCCATCGTATTCTGATTTTCCGAATGATATCCGACCAAAAGAAAATACTAAAGATACAATTATTATAGAAGCTCTTGAACATACTATAATTAAGGATTCTGTGTCTGAGCCGGCATGCTCTAATTTCTTGGTAAAAATTCCACAAGAGAAAGGCAAcgctaaacaaaaattaaaagataatgAACAGACCACAAATGACAAGCCTGTGTCCAATAATTTAGATGAGACTTTAGAAAAAAACCAATCGGTTATGAGTGACAATGACCATAAACCCTGTTCTCCAATGACTGCAACTCTAAACGATTGCCTGATGTGGCCTAAAACTCctgaacgaaaaaataaaagaaatgttgAAAGATTACCATTTGTAATATCATccagtggatttaaaaaaatatgtgaagATAAGCAGAAagaaaaggataaaaaagaaaaagaaaaagaagaaagagTACATAAGAGAGAACAAAAGAATATCGCTAACCAAAAGTTAAAGCAGGTAAAAATGACACTTAAGTCCGAGCAGGTAAAAAAGTCACTTACTGCTAAGAAAAATGAAATCACCCAACaggagaaaaatattattcagcCAAAGAAATTGGAAAACCTTAGTTGCAATGAAAATATTCAAGTGGAAAAGATGATCATTAGAACAAATACGGGGAAAACTTTAAGTTCCCTCGAAGATATTGATAAAGAGAACGGCCAAGCCAAAACAAAGCCAAAGCATGTGAAAAACTTTAATCTAATCGATGATTTTAGTCAACCATCGACTTCTGAAGCAGCTCCCCTAAATAATTTTATCCataCCTATGTTTTGGCCAAAGAAAAGGCCGAAGATACATCTGATTTCAATTCTGACTACGAAACTGTAAAAAAGGGACCAATTAAACCCGCAAGAATATACTCTTCTTCAGATGACGAAACATGTGATAGGCTACTGCCAAAACCAGAACAAAAGCGGcaagaacaacaacaacaacagcaGCAACAAGATCATTCACCATCAACACCTGCAATACCGAATGCTCCACTCGAGCCATCAACTGACGAATTTTGCGATGCTCCGTTCGACACATCAGACGAGGAATTTTGGGATAGTGATAGTGATCACACTGATGAAGAGGAGGAGGAACAACGTTTCCGCAGTATATGTTTATCCAAGGATGAGCTTCGCCAATTTGGTTATAATCCCTAg
- Protein Sequence
- MPKVKSNSKYCKSYNDDALQKAIEAVTNGMAKAKAATEYNVPRQTIQYRLGEKFKKATHGPVPILTSDEESLLEQWILESHTKGFPRRRDDVQAAVKSFLDKNPRPNPFKNNNPGKHWYQAFLKRHPLLVHRIPEGVTPSSANISENDIKSWFLKVESYLQEKDLAEVLHDSTRIFNGDETCFLLCPKEGKVLAPKGTKNAYEVDGGAAKSNLTVMFTFSASGSMAPPMIIYPYKRIPASIAASVPNDWGIGTSDNGWMKSELFYEYISNIFNKYLERSNIKKPVILFVDGHKTHLTYEISTLCTKLKIILVALYPNATRILQPADVSCFKPLKTRWKQAVLEWRRHNPLVQLKKEHFAPILNEAIKGLKDVTIINGFRACGIFPWNPNAIDFTKCLGKGKKGKENKESQQSQSNFSNNINLKYEDFCKIVGQNKLDELQAYIQHSPEQDSDEDSQSENFKILFNIYNAFKSLKSAQVVVEDQNESITEIDYSLSNEDEFTEEDLENMPIIIDIYNGEEHDTELERVIQIDKPMVNELSCSNVPVEILQEDNTEYIILKNLKPTINKNSVSEPSYSDFPNDIRPKENTKDTIIIEALEHTIIKDSVSEPACSNFLVKIPQEKGNAKQKLKDNEQTTNDKPVSNNLDETLEKNQSVMSDNDHKPCSPMTATLNDCLMWPKTPERKNKRNVERLPFVISSSGFKKICEDKQKEKDKKEKEKEERVHKREQKNIANQKLKQVKMTLKSEQVKKSLTAKKNEITQQEKNIIQPKKLENLSCNENIQVEKMIIRTNTGKTLSSLEDIDKENGQAKTKPKHVKNFNLIDDFSQPSTSEAAPLNNFIHTYVLAKEKAEDTSDFNSDYETVKKGPIKPARIYSSSDDETCDRLLPKPEQKRQEQQQQQQQQDHSPSTPAIPNAPLEPSTDEFCDAPFDTSDEEFWDSDSDHTDEEEEEQRFRSICLSKDELRQFGYNP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01238580; iTF_01240102; iTF_01240109; iTF_01240113; iTF_01240116; iTF_01240128;
- 90% Identity
- iTF_01240102;
- 80% Identity
- -