Plab039113.1
Basic Information
- Insect
- Pollenia labialis
- Gene Symbol
- -
- Assembly
- GCA_949318255.1
- Location
- OX439143.1:22190704-22201308[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2 2.7e+02 3.8 0.3 2 20 423 441 422 443 0.91 2 17 0.023 3.2 9.9 2.5 2 19 489 506 488 508 0.94 3 17 9.7 1.3e+03 1.6 1.4 3 23 522 542 521 547 0.73 4 17 2 2.8e+02 3.7 0.5 3 23 551 572 550 572 0.93 5 17 0.062 8.6 8.5 0.4 3 23 580 600 578 600 0.95 6 17 7.7e-05 0.011 17.7 0.7 1 23 607 630 607 630 0.95 7 17 8.3e-05 0.011 17.6 1.1 2 23 638 659 637 659 0.97 8 17 0.092 13 8.0 3.9 1 22 709 730 709 733 0.91 9 17 0.034 4.7 9.3 5.5 1 23 738 760 738 760 0.94 10 17 0.39 55 6.0 0.2 1 23 776 801 776 801 0.96 11 17 0.15 21 7.3 2.1 1 23 813 836 813 836 0.96 12 17 0.01 1.4 11.0 2.2 2 23 842 864 841 864 0.95 13 17 9.7e-05 0.013 17.3 2.7 3 23 869 890 868 890 0.97 14 17 2.3 3.2e+02 3.6 6.9 1 23 896 919 896 919 0.95 15 17 0.00051 0.07 15.1 0.5 1 23 924 946 924 946 0.98 16 17 0.003 0.42 12.7 4.4 1 23 952 974 952 974 0.98 17 17 1.1 1.5e+02 4.6 0.3 5 23 990 1009 980 1009 0.86
Sequence Information
- Coding Sequence
- ATGGCAGCAAGAGTTTCAACAACCACCAGAGTTTGtttatattgcaaaataaaatcggATGCTAATGCTAGAAAGGAATTTCATGAAATCTTTGATGAAGTGGGTCTAGAATTGCAGTTACCCTCCTTAGTCAAAACATATTTTCAcattgatttaaacaaaaagactaAACAAAGTCTTTGTGCTGATTGCGTTAATCGTTTAATAGAATTATATGATTTGGATGAGCACGCCAAAGAGAAATCTTgtaagacaaatttaaaaattaaggcGGAATGTGTTAAAGAAGAAAGTGGAATTGAATACACAAGCTTTGAAACTTTTGTTTCAACACAGGGAGAAGATgctatagaaattaaaaaacaaaataaatctgAAGATAATGATCGTACCGAATATGAAAATGtaggatatttttttaacaaaaacaaatctgaACCTTTTATCCAGCCACTTGACCAAAATAGTAATGATATCTCTGAGGATTATCTAGAAGAGGATTTTGATCAAACCAGTGAAAGGGAAGTTTCAAAAGATTTCAACATATCGTTATCGCCTAGTGCAATAACAGCTGAAAACTCGGAAGAACTAGAATCCAATGAACATATTGAATTTATTATCgattataaaaaccaaaatgttgaaattaacaaacaatCTAATACAAACATAGTTGGCTCAAAAGAATTAGAAACTAGAGAAGAATACCAAATTGAGACCAATGAGGAAATCGAAGTACTTTCCGAAATTGAAagtgaaacaaaagaaaaagtttttttgtacaGTGACCAAAATGATTACGTCGAAGAAAATTTATGCGAAGAAGTAGATGAAGCTGCAGAAGCTTACACATCAAATAAAACTCATAATGACAATGAAGGCCAGCAATATTTATATGTTGAAGAAGTCGATGACGTTTATGATGAAGAGGAACTATCTTCATGCCATGAAGAGGAAAGTTCAAATCAAGTTATTTACAGTGGTGATTCAAACTCATTACCAGCAGAAATTAAAATTACCGAAGAAAAGGaagatttattattaaattcaaatagaAGTGCTACAGAATTTAATAATACAGAACACATTGATGCAGATGATTTGATTGAACAAGAAGACATTTCTGATGATACGTATTCATTAGAAGAAGAGTATTTAATAGAAGaaattattttatctGAGGAACATGAAAAAGTTGACTTAAATGAGTATTTGGATAAGATACTGATAACAAAATTTCAAGACTTACTGTTAAATTGGGAAATGGAATGTAAAttgTGCCTTGAAAAATATTACTCCTTAGGGGAATTATTAAATCATGCGTGCATGGCCGAACTTGAAGAGGAACaacaattgttttgtatttttaaagattgCGAAGAACATGCAAAAGATTTACCAACTTTAGCAAGACATTTAGTACTTAAACATTATGATAAATTAGAAAGtacCGCCATTTATGGTAAATGTACAGAttgtcaaaaaacattttcaaatattttagattttaacaAGCATTCTTGCTGCCGAAATATAAAACGTAAAACTGGTGCTccaaattattgtaaatattgcGATTTGGATTTTCAATCTTTAAAAAGatATGTGTTTCATAtgcagttccatttaataaaccACAGGCCAAAAATTTGCTTATTATGTGGTGATTTATTCAGTAATTCTAATGATTTCTTTGAACATACTCAATATAAACATAATTCTGAAACTGCTTTGGCGTGTGTAAgATGTGACCGCTTTTTTAAggatataaaagtttttaataatcatATGGAATTGCATGAtgattttaaatatcaatatgcATGTACACTTTGTCCAAAAAAGTATACtaataaatttggtttaaatcaaCATATGgaTATCTATCATAATAACAAATCTAATGCCTTACAATGTGAATATTGTGCAAaagaatttgtaaataaaacgtcTTATCGTAATCATATTAAATCTCATGCTACAGATGCCAAAGTACAAACATTTATATGCTCCACATGTggtttaataacaaataatatGGAAATAATTAAGGATCATATTGAGTCAGATAATGAATCTCCTTGTTTTTCATCGCCGGTTGAcgaaaaaattttaggtttggGTTATTCATGTGAAAattgttccttagatttttgtacaataaaacatcTTAAAGATCATCGCTTAAGTGATAGTCACAGTGATGATTTATTTCATTGTGGTATGTGTACAAAAAGCTTTAATACTTTACGTCACATGCGTAATCATTCCATTAATCACAAGGATTTCAAAGAATGGCAGGAATCATTTCCAATAACTAGACATTTTGTATGCAATATAGGGGATTGTCAAGAATTCTATCCCATTTGGACCTCTTTATATTACCACAAAAAACGTCCTCATAAATCTGAAGAAAAGACAAATTATCCAACAGAGTTTAAATGCCAATTTTGTCAGCAGTTGTGCTCTTCAAAAATGTCCTTGGCTGTTCATGTAGCTAGAAGTCATAACAAtgcaaatattaaatgttcatattgcaaaagaaatttcaattcccgaaatattttacaaaaacatattgATAAATTTCATACACCCGTTGATTGTGATAtctgtttaaagaaatttaaacatCGACGCAATTTAGAAACACACATGAATTCCGTACATAATAATATAAAgcgttatttttgtaaacattgtcAAAAGGGATATTTTCATAAGAATGAAAGAAATTTACATGAAAAGAAAGTTCAccctaaaaatacttttaaatgcaaattatgcAATTTTGTAACCACTTATCCGGTATCTTTGGAAATTCATATGGACAGACATAATAATCggcttaaatttaaatgttcaaTTTGTAGCAAATCTTTTGGGCGCAAACAACTATTAGAGTGTCACTTGAAAAgacatcaaaataaaaaagaCTACAGTTGTGCCCGTTATCTGAATGAAAGTGGATGTGATGCTTCTTTTTTGACTTATAATCTACTAAAAAAACATGCccaaactaaacataacaactCAACGTttagtattaatttaaaaaaagatgaacatcgaaaaaaaaattgtgatgtgcaatttgaaaatgtttcctATAAAATATTGACTTGTGACGACAGCAGTGAATACGAAAAACACCCAAAAACACCACagataattcattttaatgatGAAGATTTTGAACAAGATGCTATTGTTTTAACATTGGAAAACGACATGGAATTCGAAGAACACAAACCTGAAACTGAGAGTTTAACAATATGA
- Protein Sequence
- MAARVSTTTRVCLYCKIKSDANARKEFHEIFDEVGLELQLPSLVKTYFHIDLNKKTKQSLCADCVNRLIELYDLDEHAKEKSCKTNLKIKAECVKEESGIEYTSFETFVSTQGEDAIEIKKQNKSEDNDRTEYENVGYFFNKNKSEPFIQPLDQNSNDISEDYLEEDFDQTSEREVSKDFNISLSPSAITAENSEELESNEHIEFIIDYKNQNVEINKQSNTNIVGSKELETREEYQIETNEEIEVLSEIESETKEKVFLYSDQNDYVEENLCEEVDEAAEAYTSNKTHNDNEGQQYLYVEEVDDVYDEEELSSCHEEESSNQVIYSGDSNSLPAEIKITEEKEDLLLNSNRSATEFNNTEHIDADDLIEQEDISDDTYSLEEEYLIEEIILSEEHEKVDLNEYLDKILITKFQDLLLNWEMECKLCLEKYYSLGELLNHACMAELEEEQQLFCIFKDCEEHAKDLPTLARHLVLKHYDKLESTAIYGKCTDCQKTFSNILDFNKHSCCRNIKRKTGAPNYCKYCDLDFQSLKRYVFHMQFHLINHRPKICLLCGDLFSNSNDFFEHTQYKHNSETALACVRCDRFFKDIKVFNNHMELHDDFKYQYACTLCPKKYTNKFGLNQHMDIYHNNKSNALQCEYCAKEFVNKTSYRNHIKSHATDAKVQTFICSTCGLITNNMEIIKDHIESDNESPCFSSPVDEKILGLGYSCENCSLDFCTIKHLKDHRLSDSHSDDLFHCGMCTKSFNTLRHMRNHSINHKDFKEWQESFPITRHFVCNIGDCQEFYPIWTSLYYHKKRPHKSEEKTNYPTEFKCQFCQQLCSSKMSLAVHVARSHNNANIKCSYCKRNFNSRNILQKHIDKFHTPVDCDICLKKFKHRRNLETHMNSVHNNIKRYFCKHCQKGYFHKNERNLHEKKVHPKNTFKCKLCNFVTTYPVSLEIHMDRHNNRLKFKCSICSKSFGRKQLLECHLKRHQNKKDYSCARYLNESGCDASFLTYNLLKKHAQTKHNNSTFSINLKKDEHRKKNCDVQFENVSYKILTCDDSSEYEKHPKTPQIIHFNDEDFEQDAIVLTLENDMEFEEHKPETESLTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01237140;
- 90% Identity
- iTF_01237140;
- 80% Identity
- -