Basic Information

Insect: Pollenia griseotomentosa
Gene Symbol: -
Assembly: GCA_963931875.1
Location: OZ007564.1:24829001-24842198[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 4.4 7.2e+02 2.7 0.3 2 20 463 481 462 483 0.92

2 17 8.1 1.3e+03 1.9 0.2 4 23 497 517 497 517 0.88

3 17 0.024 4 9.8 2.5 2 19 529 546 528 548 0.94

4 17 4.9 8.1e+02 2.6 0.5 3 23 591 612 590 612 0.93

5 17 0.066 11 8.5 0.4 3 23 620 640 618 640 0.95

6 17 3.6e-05 0.0059 18.7 0.9 1 23 647 670 647 670 0.96

7 17 0.00017 0.029 16.6 1.7 1 23 677 699 677 699 0.98

8 17 0.098 16 7.9 3.9 1 22 749 770 749 773 0.91

9 17 0.036 6 9.3 5.5 1 23 778 800 778 800 0.94

10 17 0.42 70 5.9 0.2 1 23 816 841 816 841 0.96

11 17 0.16 27 7.2 2.1 1 23 853 876 853 876 0.96

12 17 0.00024 0.039 16.2 2.6 2 23 882 904 881 904 0.95

13 17 3e-05 0.0051 19.0 1.9 2 23 908 930 907 930 0.96

14 17 2.9 4.9e+02 3.3 7.4 1 23 936 959 936 959 0.95

15 17 0.00057 0.095 15.0 0.2 1 23 964 986 964 986 0.98

16 17 0.0032 0.53 12.6 4.4 1 23 992 1014 992 1014 0.98

17 17 1.6 2.7e+02 4.1 0.8 5 23 1030 1049 1020 1049 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	4.4	7.2e+02	2.7	0.3	2	20	463	481	462	483	0.92
2	17	8.1	1.3e+03	1.9	0.2	4	23	497	517	497	517	0.88
3	17	0.024	4	9.8	2.5	2	19	529	546	528	548	0.94
4	17	4.9	8.1e+02	2.6	0.5	3	23	591	612	590	612	0.93
5	17	0.066	11	8.5	0.4	3	23	620	640	618	640	0.95
6	17	3.6e-05	0.0059	18.7	0.9	1	23	647	670	647	670	0.96
7	17	0.00017	0.029	16.6	1.7	1	23	677	699	677	699	0.98
8	17	0.098	16	7.9	3.9	1	22	749	770	749	773	0.91
9	17	0.036	6	9.3	5.5	1	23	778	800	778	800	0.94
10	17	0.42	70	5.9	0.2	1	23	816	841	816	841	0.96
11	17	0.16	27	7.2	2.1	1	23	853	876	853	876	0.96
12	17	0.00024	0.039	16.2	2.6	2	23	882	904	881	904	0.95
13	17	3e-05	0.0051	19.0	1.9	2	23	908	930	907	930	0.96
14	17	2.9	4.9e+02	3.3	7.4	1	23	936	959	936	959	0.95
15	17	0.00057	0.095	15.0	0.2	1	23	964	986	964	986	0.98
16	17	0.0032	0.53	12.6	4.4	1	23	992	1014	992	1014	0.98
17	17	1.6	2.7e+02	4.1	0.8	5	23	1030	1049	1020	1049	0.86

Sequence Information

Coding Sequence: ATGGCAGCAAGAGTTTCAACAACCACTAGAGTTTGTTTATATTGCAAAGTAAAATCGGATGCTAGTGCTGAAACGGAATTTCATGAAATTTTTGATGAAGTGGGTCTAGAATTGCAGTTACCCTCCTTAGTGAAAACATATTTTCACATTGATTTAAGCAAAAAGACTAAACAAAGTCTTTGTGCTGATTGCGTTAATCGTTTAATAGAATTATATGATTTGGATGAGCACGCCAAAGAGGAAAGTTgtaagacaaatttaaaaattaagccGGAATATGTTAATGAAGAAAgtagtaaatattttaaaaacgaatGTGGAAATCTTAGATACGAATGTAAAAACTTTCATAAACCTTTTGTTGTTGGTCAAAATAATACTCAAGTTACTTTACCCAAAAGTAATTACATTGAATACACAAACTTTGAAACTTTTGTTTCAACACAAGGAGAAGATGCTATagaaattaagaaacaaaatagatCTGAAGATAATGATCGTAcggaatataaaaatattgaaaatgtaggatatttttttaacaaaaacagaTCTGAACCTTTCATCCAGCCACATGACCAAAGTAGTAATGATATCGCTGAGGATTATCTAGAAGAGGATTTTGACCGAACCAGTGAAAGGGAAGTTTCAAAAGATTTCAACATATCGTTATCGCCTAGTGCAATAACTTCTGAAAACTCGGAAGAACCAGAATCCAATGAACATATTGAATTTATCATCGATTATGAAAACCAAAATGTGGAAATTAACAAACAATCTAATACAAACATAGTTGGCTCTAAAGAATTAGAAACGAGAGAAGAATACAAAATTGAGACTAACGAGGAAATCGAAGTACTTTCCGAAATTGAAAGTGAAACaaaagaaaaggtttttttgtacaGTGACCAAAATGATTAtgtcaaagaaaatttatgcGAAGAAGTAGATGAAGCTGCAGAAGCTTAcacattaaataaaactcataaTGACAATGAAGGTCAGCAATATTTATATGTTGAAGAAGTCGATGACGTTTATGATGAAGAGGAACTATCTTCATATTATGAAGAGGAAAGTTCAAATCAAGTTATCTACAGTGGTGATTCAAACTCATTACCAGCAGAAATTAAAAGTACCGAAGAAAAGGAAGActtattattaaattcaaatagTAGTGCAACAGAATTTAATAATACAGAACACATTGATGCAGATGATTTGATTGAACAAGAAGACATTTCTGATGATACGTATTCATTAGAAGAAGAGTATTTAATAGAAGaaattattttatctGAGGAACATGATAAAGTTGACTTAAATGAGTATTTGGATAAGATACTGATAACAAAATTTCAAGACTTACTGTTAAATTGGGAAATGGAATGTAAAttGTGCCTTGAAAAATATTACTCCTTTGGGGAATTATTAAATCATGCGTGCATTGCCGAATTTGAAGAGGAGCAacaattgttttgtatttttaaagattgCGAAGAACATACAAAAGATTTACCAACTTTAGCAAGACATTTAGTACTAAAACATTATGATAAATTAGAAAGtacCGCCATTTATGGTAAATGTACAGattgtcaaaaaacattttcaaatattttagattttaacAAGCATTCTTGCTGCCGAAATATAAAACGTAAAACTGGTGCTCcaaattattgtaaatattgcGATTTGGATTTTCAATCTTTAAAAAGATATGTGTTTCATATgcagttccatttaataaacCACAGGCCAAAAATTTGCTTATTATGTGGTGATTTATTCAACAATTCTAATGATTTCTTTGAACATACTCAATATAAACATAATTCTGAAACTGCTTTGGCGTGTGTAAgATGTGACCGCTTTTTTAAggatataaaagtttttaataatcatATGGAATTGCATGAAGATTCTAAATATCAATATGAATGTACACTTTGTCCAAAAAAGTATACtaataaatttggtttaaatcaaCATATGGATATTTATCATAACAACAAATCTAATGCCTTCCAATGTGAATATTGTGCAAAAGAATTTGTTAATAGAACGTCTTATCGTAATCATGTTAAATCTCATGCTACAGATGCCAAAGTACAAACATTTATATGCTCCACATGTGGTTTAATAACTAATAATATGGAAATAATTAAGGAACATATTGAGTCAGATAATGAATCTCCTTGTTTTTCATCGCCGGTTGACGAAAAACTTTTAGGTTTGGGTTATTCATGTGAAAATTGTTCCTTAGatttttgtacaataaaacatcTTAAAGATCATCGCTTAAGTGATAGTCACAGTGATGATTTGTTTCATTGTGGTATGTGTACAAAAAGCTTTAATACTTTACGTCACATGCGTAATCATTCCATTAATCACAAGGATTTTAAAGAATGGCAGGAATCATTTCCAATAACTAGACATTTTGTATGCAATATAGgggATTGCCAAGAATTCTATCCCATTTGGACCTCTTTATATTACCACAAAAAACGTCCTCATAAATCTGAAGAAAAGACAAATTTTCCAACAGAGTTTAAATGCCAATTTTGTCAGCAGTTGTGCTCTTCAAAAATGTCCTTGGCTGTTCATGTAGCTAGAAGTCATAACAatgcaaatattaAATGTTCATATTGCAAAAGAAATTTCAATTCCCGAAACATGTTACAAAAACATATTGATAAATTTCATACACCCGTTGAATGTGATAtctgtttaaagaaatttaaacatCGACGTAATTTAGAAACACACATGAATTCCGTACATAATAATATAAAGCgttatttttgtaaacattgtaaAAAGGGATATTTTCATAAGAATGAAAGAAATTTACATGAAAAGAAAGTTCACCctaaaaattcttttgaatgTAAATTATGCAACTTTGTAACCACTTATCCGGCATCTTTGGAAATTCATATGGACAGACATAATAATCggcttaaatttaaatgttcaaTTTGTAGCAAATCTTTTGGGCGCAAACAACTATTAGAGTGTCACTTGAAAAgacatcaaaataaaaaagaCTACAGCTGCGCCCATTATCTGAATGAAAGTGGATGTGATGCTTCTTTTTTGACTTATAATCTACTGAAAAAACATGCACAAACTAAACATGAAAACTCAAAGTttagtattaatttaaaaagagatGAACATCGAAAAAAAGATCGTGATGtgcaatttgaaaatatttcctataaaatattgACTTGTGACGAAAGCAGTGAATATGAAAAACAACCAAAAACATCACAggaaattcattttaatgatgaagaTTTTGAACAAGATGCTATTGTGTTAACTTTGGAAAACGACATGGAATTCGAAGAACATAAACCTGAAACGGAGAGTTTAACAATATGA
Protein Sequence: MAARVSTTTRVCLYCKVKSDASAETEFHEIFDEVGLELQLPSLVKTYFHIDLSKKTKQSLCADCVNRLIELYDLDEHAKEESCKTNLKIKPEYVNEESSKYFKNECGNLRYECKNFHKPFVVGQNNTQVTLPKSNYIEYTNFETFVSTQGEDAIEIKKQNRSEDNDRTEYKNIENVGYFFNKNRSEPFIQPHDQSSNDIAEDYLEEDFDRTSEREVSKDFNISLSPSAITSENSEEPESNEHIEFIIDYENQNVEINKQSNTNIVGSKELETREEYKIETNEEIEVLSEIESETKEKVFLYSDQNDYVKENLCEEVDEAAEAYTLNKTHNDNEGQQYLYVEEVDDVYDEEELSSYYEEESSNQVIYSGDSNSLPAEIKSTEEKEDLLLNSNSSATEFNNTEHIDADDLIEQEDISDDTYSLEEEYLIEEIILSEEHDKVDLNEYLDKILITKFQDLLLNWEMECKLCLEKYYSFGELLNHACIAEFEEEQQLFCIFKDCEEHTKDLPTLARHLVLKHYDKLESTAIYGKCTDCQKTFSNILDFNKHSCCRNIKRKTGAPNYCKYCDLDFQSLKRYVFHMQFHLINHRPKICLLCGDLFNNSNDFFEHTQYKHNSETALACVRCDRFFKDIKVFNNHMELHEDSKYQYECTLCPKKYTNKFGLNQHMDIYHNNKSNAFQCEYCAKEFVNRTSYRNHVKSHATDAKVQTFICSTCGLITNNMEIIKEHIESDNESPCFSSPVDEKLLGLGYSCENCSLDFCTIKHLKDHRLSDSHSDDLFHCGMCTKSFNTLRHMRNHSINHKDFKEWQESFPITRHFVCNIGDCQEFYPIWTSLYYHKKRPHKSEEKTNFPTEFKCQFCQQLCSSKMSLAVHVARSHNNANIKCSYCKRNFNSRNMLQKHIDKFHTPVECDICLKKFKHRRNLETHMNSVHNNIKRYFCKHCKKGYFHKNERNLHEKKVHPKNSFECKLCNFVTTYPASLEIHMDRHNNRLKFKCSICSKSFGRKQLLECHLKRHQNKKDYSCAHYLNESGCDASFLTYNLLKKHAQTKHENSKFSINLKRDEHRKKDRDVQFENISYKILTCDESSEYEKQPKTSQEIHFNDEDFEQDAIVLTLENDMEFEEHKPETESLTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01238061;
90% Identity: iTF_01238061;
80% Identity: -