Basic Information

Insect: Pollenia labialis
Gene Symbol: grau
Assembly: GCA_949318255.1
Location: OX439143.1:35213203-35224548[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 3.5e-06 0.00049 21.9 3.1 1 23 321 343 321 344 0.96

2 17 0.00044 0.06 15.3 1.7 3 23 354 374 352 374 0.95

3 17 2.7 3.8e+02 3.3 0.8 1 23 382 407 382 407 0.93

4 17 0.04 5.5 9.1 0.7 3 23 414 434 413 434 0.97

5 17 0.6 83 5.4 0.2 3 23 444 467 442 467 0.80

6 17 0.0061 0.84 11.7 6.3 1 23 472 495 472 495 0.97

7 17 1.5e-05 0.0021 19.9 0.4 1 23 500 522 500 522 0.97

8 17 0.00043 0.06 15.3 2.5 1 23 528 551 528 551 0.97

9 17 0.7 97 5.2 0.4 6 23 815 832 815 832 0.98

10 17 0.0017 0.24 13.4 5.5 1 23 838 861 838 861 0.94

11 17 0.016 2.2 10.4 0.4 1 20 869 888 869 891 0.92

12 17 1.4 1.9e+02 4.3 0.5 1 22 899 922 899 924 0.87

13 17 0.046 6.4 8.9 2.1 3 23 931 951 930 951 0.97

14 17 0.29 40 6.4 0.1 2 23 960 983 959 983 0.92

15 17 5.1e-05 0.007 18.2 2.4 1 23 990 1013 990 1013 0.97

16 17 7e-06 0.00097 20.9 1.2 1 23 1018 1040 1018 1040 0.97

17 17 0.0012 0.16 13.9 5.2 1 23 1046 1069 1046 1069 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	3.5e-06	0.00049	21.9	3.1	1	23	321	343	321	344	0.96
2	17	0.00044	0.06	15.3	1.7	3	23	354	374	352	374	0.95
3	17	2.7	3.8e+02	3.3	0.8	1	23	382	407	382	407	0.93
4	17	0.04	5.5	9.1	0.7	3	23	414	434	413	434	0.97
5	17	0.6	83	5.4	0.2	3	23	444	467	442	467	0.80
6	17	0.0061	0.84	11.7	6.3	1	23	472	495	472	495	0.97
7	17	1.5e-05	0.0021	19.9	0.4	1	23	500	522	500	522	0.97
8	17	0.00043	0.06	15.3	2.5	1	23	528	551	528	551	0.97
9	17	0.7	97	5.2	0.4	6	23	815	832	815	832	0.98
10	17	0.0017	0.24	13.4	5.5	1	23	838	861	838	861	0.94
11	17	0.016	2.2	10.4	0.4	1	20	869	888	869	891	0.92
12	17	1.4	1.9e+02	4.3	0.5	1	22	899	922	899	924	0.87
13	17	0.046	6.4	8.9	2.1	3	23	931	951	930	951	0.97
14	17	0.29	40	6.4	0.1	2	23	960	983	959	983	0.92
15	17	5.1e-05	0.007	18.2	2.4	1	23	990	1013	990	1013	0.97
16	17	7e-06	0.00097	20.9	1.2	1	23	1018	1040	1018	1040	0.97
17	17	0.0012	0.16	13.9	5.2	1	23	1046	1069	1046	1069	0.98

Sequence Information

Coding Sequence: atgatTTGTTTTGTGTGCACAGAAAATGCGAATCATACTATAGCAATATTTGGAAAAGATGATGGATATTCTAAAATTGCTGCAACTATTGAAAAGCATTTATGTCTGAAGCCTCAGGTAAAGGAGGAACAAGGAGAAACTTTAGAAATATGTAATAAATGTTGGGAAAAGTTACGAGATTTCAATGAATTTTTCGAGTTTGTCGCTAAAGTTCACAATGAACAAACGAAATGCTTTCAAAAGGAATTAATGGAAGATACTGGTGGTGTGCAACAGGAAGAGAAAAATATTTGGGATGCAAATATAAAGACTGAAACATTAGAAGAAACTTTGGACAGTAATGTAGAATTGCATTTCTTTGAAACAGATGATGCTTTTACGGAAAATCCGTTACTAGATCTAGAACCAGAGGAAGATAATGACATGGTCGATTTTATGGGGAAAGATATCAAAACTAAGAATGAAAAATCGAAAAGTACTAAAACGCGACGAagtcaaaaagtaataaaacgtGCTAAAAGTCCTAAAAAGTCAAGTGATAGTGAAGATGATGAATATAACGAACAGTCATTAGCTTCCCTGCTAGAAGAcattaaaaatgaagaaaatgatgaaacttttaatgcaaataattcattaaaaaatagttcagaTAAGAAAACGAAGAGAACTGTAACTGGCACAGAAAGTAAACGCTCGctcaaaaaagcagaaaaacaCAATGAACCAAAACGGCGAAAGGGGCATGTTTTATTGGAAGAAAATGATGGCCTAATTAAAAAGcacataaaaatgttatgtcaaaTGTGTTCTCACATTGATGaagatttttccaatttaataaaacactATAAAGAGATGCATGTTGGTGtaaaaccttttataaaatgttgtgAACGTAAATTGGATTGTCCATCGGACATATTACAGCATGCCTATTTCCATGAGGATCCTGAACATTTTAAGTGTCAAGAGTGtggaaaaacatttataaataactCTGGACTAAAGGATCATTTTATGAAACATCACGAACCTGAGGAAAATCTGCCGTATGGCTGTGATGAATGTCCGCGaagattttcaagaaaaaatctATTGGCTCATCATAAAGCTAAACATATACCCAAAACGGAAAGATCACACTTTTGTCAAATATGTTCGCCGCGAAAGGCATTTGCTAGCGAGTATATATTACAGATTCATATAAAGTCACGTCATACGAAAGCCTCCAATATTTGCCATGTGTGCGCTAAAGAAATACGAGATAAACAGGCTTTCGAAAAACATGTACGTTTACATTTTGAAACAAGTGGTCCACGTATTAAATGTCCCCGCGAAGGTTGTGAAAGTTGGCTTAAAGATGAGGACAATTTAAAACAGCATTTAAGACGCTTTCACAATCAATCAAAATATGAGTGTCCTGAATGTGGAcgaatatgcaaaaataaacattctttAACTTGTCATTTAAGAAACACACATTCCACTCAAACCTTTACCTGTGAAGAATGTCAAAAGACCTTTAAAAGTGCTTTATCATTAAagGAACATATGGCTGGTCACACGGGAGAGCCTTTATACAGTTGCCCGTTTTGTACAAGAACTTTTAATTCCAAGGCAAACATGTATTCGCATAAGAAAAAAGCACATCCCATAGAATGGGATTTAGTTAACAAATCTAAAATGggtGTTTTTGAGGTCACTCTCAGAAAACTTAATATTGCCGAAATAATACAGCAACATTTTTGGTTTAAGCctacacccaatgatgaaagtTCTACACAAATTTGTATCCAGTGCTGGGATAAAATCAAAGATTTTCACGACTTTTATCAAAATGTAGAAAAATCACACAATCGGTTGCAAACTCATAGTCTAGCCATTAAGGAGGAAGAGGAAAAACCTTGTAGTAGCGCTATTAAACAAGAAGAGGAAACTTTGGAAGACAATCTCATGCAAGTAGAAGTTGAAATTGATGTTAATGCCAATGTTGACCAAGAAACTGAAGAAGTTAAAGAAAATCCTTTAAAAGGTGAACGAATTATTAAAGATGTTGAATTAGATGAAGAATCAGAAATTGAGAGTTGTGATAGCTCCTTCAATGACTTTGAGAATACGGAAATAAGTGAAGATGATAGTTCCGCCAGAGAAGAAGTACAGAGAAAAGATAAACAAAATaaggacaaaaataaaaaaattaaagatgttaAAAAGGCGAGAAAAAAGAAGAGATCGGACAAGGgagcaaagaaaaataataccaccactactaaaaaaaaatggacgGATAAGTTTTTAGATCCTATTTTAACAGAACAAATGATAAAAAAGCATATTAATATGATTTGCGACTTGTGCGTATTCGTGGGTTCTTCTTTTCCTGATATGGTTAGTCATTTTAAGAAATACCATCCCAAAGTGCGGCCCTATATAATGTGTTGTGATAGAAAATTTACCAAGCGTTATTATGTAGCGCAGCATGCTTTAAAACATGAAGATCCGaattattttagaTGCGAACAGTGCAATAAATCCTTTACAACAACCTGTAGTCTTCGTACACATAATTTGTCTTATCATGCACCAGAAGAAGCACTTTTGCATCCTTGTGAATCGTGCCCAAGAAAATTTGCCAGGCGGAATTTATTAGAACTTCATCGTCCAGTTCACATACCAAAAGAAGAATGGAAATTCTTTTGTACCAAATGCCCGACAAAGAAAGCgTTTGCAActgtgtatttattaaatattcataaTGGTATGAATCATAAAAAAGAGGCAAATATTTGTCATGTATGTGCCAAGGAGATAAAGGACAAACATGCTTTTGAAAAGCATGTACGTTTACATTTTGAAGACAGTGGTCCACGGGTTAAATGTCCTTATCCTGATTGTGATAGCTGGCTAAAAGATGAGGATAACTTAAAGTCTCATTTGCAAAGACACAATCCCGAaggtaaaatttataaatgtccAGAGTGTGGAAAGCTGTGTAAAAATCGTGGAGCCCTTACGAATCATAAGCGTTATAGTCATACTAACGAGATATTCCAGTGTGAGGAATgtaataaaacattcaaaaaagcaatatCCTTAAGAGAACATATGACACAACATACAGGTGAAACTTTATATAAATGCCCGTTTTGTACACGAACTTTCAATTCAAATGCAAACATGCATTCAcataaaaagaaacaacatCCAGTAGAATGGGatgaatggagaaaaaataaaaaatgcagtgCCCAAgcttttattaataatactAATCCTTTACTACAAAActag
Protein Sequence: MICFVCTENANHTIAIFGKDDGYSKIAATIEKHLCLKPQVKEEQGETLEICNKCWEKLRDFNEFFEFVAKVHNEQTKCFQKELMEDTGGVQQEEKNIWDANIKTETLEETLDSNVELHFFETDDAFTENPLLDLEPEEDNDMVDFMGKDIKTKNEKSKSTKTRRSQKVIKRAKSPKKSSDSEDDEYNEQSLASLLEDIKNEENDETFNANNSLKNSSDKKTKRTVTGTESKRSLKKAEKHNEPKRRKGHVLLEENDGLIKKHIKMLCQMCSHIDEDFSNLIKHYKEMHVGVKPFIKCCERKLDCPSDILQHAYFHEDPEHFKCQECGKTFINNSGLKDHFMKHHEPEENLPYGCDECPRRFSRKNLLAHHKAKHIPKTERSHFCQICSPRKAFASEYILQIHIKSRHTKASNICHVCAKEIRDKQAFEKHVRLHFETSGPRIKCPREGCESWLKDEDNLKQHLRRFHNQSKYECPECGRICKNKHSLTCHLRNTHSTQTFTCEECQKTFKSALSLKEHMAGHTGEPLYSCPFCTRTFNSKANMYSHKKKAHPIEWDLVNKSKMGVFEVTLRKLNIAEIIQQHFWFKPTPNDESSTQICIQCWDKIKDFHDFYQNVEKSHNRLQTHSLAIKEEEEKPCSSAIKQEEETLEDNLMQVEVEIDVNANVDQETEEVKENPLKGERIIKDVELDEESEIESCDSSFNDFENTEISEDDSSAREEVQRKDKQNKDKNKKIKDVKKARKKKRSDKGAKKNNTTTTKKKWTDKFLDPILTEQMIKKHINMICDLCVFVGSSFPDMVSHFKKYHPKVRPYIMCCDRKFTKRYYVAQHALKHEDPNYFRCEQCNKSFTTTCSLRTHNLSYHAPEEALLHPCESCPRKFARRNLLELHRPVHIPKEEWKFFCTKCPTKKAFATVYLLNIHNGMNHKKEANICHVCAKEIKDKHAFEKHVRLHFEDSGPRVKCPYPDCDSWLKDEDNLKSHLQRHNPEGKIYKCPECGKLCKNRGALTNHKRYSHTNEIFQCEECNKTFKKAISLREHMTQHTGETLYKCPFCTRTFNSNANMHSHKKKQHPVEWDEWRKNKKCSAQAFINNTNPLLQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01237068;
90% Identity: iTF_01237068;
80% Identity: -