Basic Information

Insect: Pollenia griseotomentosa
Gene Symbol: grau
Assembly: GCA_963931875.1
Location: OZ007564.1:38833685-38837756[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3.5e-06 0.00057 21.9 3.1 1 23 322 344 322 345 0.96

2 16 0.00067 0.11 14.7 1.6 3 23 355 375 353 375 0.95

3 16 2.7 4.4e+02 3.4 0.8 1 23 383 408 383 408 0.93

4 16 0.039 6.4 9.2 0.7 3 23 415 435 414 435 0.97

5 16 0.58 97 5.5 0.2 3 23 445 468 443 468 0.80

6 16 0.0059 0.99 11.8 6.3 1 23 473 496 473 496 0.97

7 16 1.4e-05 0.0024 20.0 0.4 1 23 501 523 501 523 0.97

8 16 0.00042 0.07 15.4 2.5 1 23 529 552 529 552 0.97

9 16 0.69 1.1e+02 5.3 0.4 6 23 816 833 816 833 0.98

10 16 0.0017 0.28 13.5 5.5 1 23 839 862 839 862 0.94

11 16 0.016 2.6 10.4 0.4 1 20 870 889 870 892 0.92

12 16 1.3 2.2e+02 4.4 0.5 1 22 900 923 900 925 0.87

13 16 0.045 7.4 9.0 2.1 3 23 932 952 931 952 0.97

14 16 0.28 47 6.5 0.1 2 23 961 984 960 984 0.92

15 16 5e-05 0.0082 18.3 2.4 1 23 991 1014 991 1014 0.97

16 16 0.0042 0.69 12.2 0.3 1 17 1019 1035 1019 1036 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3.5e-06	0.00057	21.9	3.1	1	23	322	344	322	345	0.96
2	16	0.00067	0.11	14.7	1.6	3	23	355	375	353	375	0.95
3	16	2.7	4.4e+02	3.4	0.8	1	23	383	408	383	408	0.93
4	16	0.039	6.4	9.2	0.7	3	23	415	435	414	435	0.97
5	16	0.58	97	5.5	0.2	3	23	445	468	443	468	0.80
6	16	0.0059	0.99	11.8	6.3	1	23	473	496	473	496	0.97
7	16	1.4e-05	0.0024	20.0	0.4	1	23	501	523	501	523	0.97
8	16	0.00042	0.07	15.4	2.5	1	23	529	552	529	552	0.97
9	16	0.69	1.1e+02	5.3	0.4	6	23	816	833	816	833	0.98
10	16	0.0017	0.28	13.5	5.5	1	23	839	862	839	862	0.94
11	16	0.016	2.6	10.4	0.4	1	20	870	889	870	892	0.92
12	16	1.3	2.2e+02	4.4	0.5	1	22	900	923	900	925	0.87
13	16	0.045	7.4	9.0	2.1	3	23	932	952	931	952	0.97
14	16	0.28	47	6.5	0.1	2	23	961	984	960	984	0.92
15	16	5e-05	0.0082	18.3	2.4	1	23	991	1014	991	1014	0.97
16	16	0.0042	0.69	12.2	0.3	1	17	1019	1035	1019	1036	0.91

Sequence Information

Coding Sequence: atgattTGTTTTGTGTGCATAGAAAATGCGAATCATACTATAGCAATATTTGGAAAAGATGATGGCTATTCTAAAATTGCTGCAActattgaaaaacatttatatcTGAAGCCCCAGGTAAAGGAGGAACAAGGAGAAACCTTGGAAATATGTAATAAATGTTGGGAAAAGTTACGAGATTTCAATGAATTTTTCGAGTATGTCGCTAAAGTTCACAAAGAACAAACGAAATGCTTTCAACAGGAATTATTGGAAGATACTGGTGGTGGTGTGCAACAGGAAGAGAAAAATATTTGGGATGCAAATATAAAGACCGAAACATTAGAAGAAACTTTGGACAGTAATGTAGAAttgcatttctttgaaacagaTGATGCTTTTACGGAAAATCCGTTACTAGATCTAGCACCAGAGGAAGATAATGACATGGTCGATTTTATGGGAAAAGATATCAAAACTAAGAATGAAAAATCTAAAAGTACTAAAACGCGACGAagtcaaaaagtaataaaacgtGCTAAAAGTCCTAAAAATTCAAGTGATAGTGAAGATGATGAATATAACGAACAGTCATTAGCTTCCCTGCTAGAAGACAtcaaaaatgaagaaaatgatgaaacttttaatacaaataattcattaaaaaatagttcagaaaagaaaacgaaGAGAACTGTAACTCGCACAGAAAGTAAGCGCTCGCTCAAAAAAGCAGAAAAACCTAATGAACCAAAACGGCGAAAGGGGCATGTTTTATTGGAAGAAAATGATGGCCTAATTAAAAAGcacataaaaatgttatgtcAAATGTGTTCTCACATTGACGAAGATTTTTCCAACTTAATAAAACACTACAAAGAGATGCATGTTGGTGTAAAACCTTTTATAAAATGTTGTGAACGTAAATTGGATTGCCCATCAGACATATTACAGCATGCCTATTTCCATGAGGATCCTGAACATTTTAAGTGTCAAGAGTGTggaaaaacatttataaataattcTGGACTAAAGGATCATTTTATGAAACATCACGAACCTGAGGAAAACTTGCCGTATGGCTGTGATGAATGCCCGCGTAGATTTTCAAGAAGAAATCTACTGGCTCATCATAAAGCTAAACATATACCCAAAACAGAAAGATCTCACTTTTGTCAAATATGTTCACCGCGAAAGgcCTTTGCTAGCGAGTATATATTGCAGATTCACATAAAGTCCCGCCATACGAAAGCCTCCAATATTTGCCATGTGTGCGCTAAAGAAATACGAGATAAACAAGCTTTCGAAAAACATGTACGTTTACATTTTGAAACAAGTGGTCCACGTATTAAATGTCCCCGCGAAGGTTGTGAAAGTTGGCTTAAAGATGAGgacaatttaaaacaacatttaagACGCTTTCACAATCAATCAAAATATGAGTGTCCTGAATGTGGAcgaatatgcaaaaataaacattctttAACTTGTCATTTAAGAAACACACATTCCACTCAAACATTTACCTGTGAAGAATGCCAAAAGACCTTTAAAAGTGCTTTATCATTAAAgGAACATATGGCTGGTCACACGGGAGAGCCTTTATACAGTTGTCCGTTTTGTACAAGAACTTTTAATTCCAAGGCAAACATGTATTCGCATAAGAAAAAAGCACATCCCATAGAATGGGATTTAGTTAACAAATCTAAAATGGgtGTTTTTGAGGTCACTCTTAGAAAACTTAATATTGCAGAAATAATACAGCAACATTTTTGGTTTAAGCCTACACCCAATGATGAAAGTTCTACACAAATTTGTATCCAGTGCTGGGATAAAATCAAAGATTTTCACgacttttatcaaaatgtagaaaaatCACACAATCGGTTGCAAACTCATAGTCTAGCCATAAAGGAGGAAGAGGAAAAACCTTGTACAAGCGCTATTAAACAGGAAGACGAAACTTTTGAAGACAACCTCATGCAAGTAGAAGTTGAAATCGATGTAAATGCCAATGTTGACCAAGAAACTGAAGAAGTTAAAGAAAATCCTTTAAAAGGTGAACGAATTATTAAAGATGTTGAATTAGATGATGAATCAGAAATTGAGAGTAGTGATAGctctttaaataactttgagaATACGGAAATCAGTGAAGATGATAGTTCCGCCAGAGAAGAAGTAAAGagaaaagataaacaaaataaggataaaaataaaaaaactaaagatgttAAAAAGGCGAGGAAAAAGAAGAGATCGGACAAGGGGGAAAGGAAAAATAATACCaccaatactaaaaaaaaatggacgGATAAGTTTTTAGATCCCATTTTAACAGAACAAATGATAAAAAAGCATATTAATATGATTTGCGACTTATGCGTATTCGTGGGTTCTTCTTTTCCTGATATGGTTAGTCATTTTAAGAAATACCATCCCAAAGTGCGGCCCTATATAATGTGTTGTGATAGGAAATTTACCAAGCGTTATTATGTAGCGCAGCATGCTTTAAAACATGAAGATCCAAattattttagATGCGAACAGTGCAATAAATCCTTTACAACAACCTGTAGTCTTCGCACACATAATTTGTCTTATCATGCACCAGAAGAAGCACTTTTGCATCCTTGTGAATCGTGCCCAAGAAAATTTGCCAGGCGGAATTTATTAGAACTTCATCGTCCAGTTCACATACCAAAAGAAGAATGGAAATTCTTTTGTACCAAATGCCCGACAAAGAAAGCgTTTGCAActgtgtatttattaaatattcataaTGGTATGAATCATAAAAAAGAGGCAAATATTTGTCATGTATGCGCCAAGGAGATTAAGGATAAACATGCTTTTGAAAAGCATGTACGTTTACATTTTGAAGACAGTGGTCCACGGGTTAAATGTCCTTATCCTGACTGTGATAGTTGGCTAAAAGATGAGGATAACTTAAAGTCTCATTTGCAAAGACACAATCCCGAaggtaaaatttataaatgtcCAGAGTGTGGAAAGCTGTGTAAAAATCGTGGAGCCCTTACAAATCATAAACGTTATAGTCATACTAACGAGATATTCCAGTGTGAGGAATGTAATAAAACATTCAAGAAAGCAATATCGTTAAGAGTAAGTATTAACATAAATATACAGGTATGTGCTGGAAAATGA
Protein Sequence: MICFVCIENANHTIAIFGKDDGYSKIAATIEKHLYLKPQVKEEQGETLEICNKCWEKLRDFNEFFEYVAKVHKEQTKCFQQELLEDTGGGVQQEEKNIWDANIKTETLEETLDSNVELHFFETDDAFTENPLLDLAPEEDNDMVDFMGKDIKTKNEKSKSTKTRRSQKVIKRAKSPKNSSDSEDDEYNEQSLASLLEDIKNEENDETFNTNNSLKNSSEKKTKRTVTRTESKRSLKKAEKPNEPKRRKGHVLLEENDGLIKKHIKMLCQMCSHIDEDFSNLIKHYKEMHVGVKPFIKCCERKLDCPSDILQHAYFHEDPEHFKCQECGKTFINNSGLKDHFMKHHEPEENLPYGCDECPRRFSRRNLLAHHKAKHIPKTERSHFCQICSPRKAFASEYILQIHIKSRHTKASNICHVCAKEIRDKQAFEKHVRLHFETSGPRIKCPREGCESWLKDEDNLKQHLRRFHNQSKYECPECGRICKNKHSLTCHLRNTHSTQTFTCEECQKTFKSALSLKEHMAGHTGEPLYSCPFCTRTFNSKANMYSHKKKAHPIEWDLVNKSKMGVFEVTLRKLNIAEIIQQHFWFKPTPNDESSTQICIQCWDKIKDFHDFYQNVEKSHNRLQTHSLAIKEEEEKPCTSAIKQEDETFEDNLMQVEVEIDVNANVDQETEEVKENPLKGERIIKDVELDDESEIESSDSSLNNFENTEISEDDSSAREEVKRKDKQNKDKNKKTKDVKKARKKKRSDKGERKNNTTNTKKKWTDKFLDPILTEQMIKKHINMICDLCVFVGSSFPDMVSHFKKYHPKVRPYIMCCDRKFTKRYYVAQHALKHEDPNYFRCEQCNKSFTTTCSLRTHNLSYHAPEEALLHPCESCPRKFARRNLLELHRPVHIPKEEWKFFCTKCPTKKAFATVYLLNIHNGMNHKKEANICHVCAKEIKDKHAFEKHVRLHFEDSGPRVKCPYPDCDSWLKDEDNLKSHLQRHNPEGKIYKCPECGKLCKNRGALTNHKRYSHTNEIFQCEECNKTFKKAISLRVSININIQVCAGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01237946;
90% Identity: iTF_01237946;
80% Identity: -