Plab018940.1
Basic Information
- Insect
- Pollenia labialis
- Gene Symbol
- -
- Assembly
- GCA_949318255.1
- Location
- OX439140.1:140336825-140339296[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.3 1.1e+03 1.8 0.1 5 16 50 61 48 63 0.85 2 13 0.0015 0.21 13.6 5.8 2 23 239 260 238 260 0.97 3 13 0.042 5.8 9.0 2.3 1 23 266 291 266 291 0.93 4 13 0.022 3 9.9 0.2 3 23 300 323 298 323 0.93 5 13 0.00049 0.068 15.1 2.3 1 23 334 356 334 356 0.98 6 13 3.4e-06 0.00047 21.9 0.2 1 23 363 385 363 385 0.98 7 13 0.016 2.2 10.4 0.1 1 23 391 413 391 413 0.98 8 13 0.01 1.4 11.0 4.8 1 23 419 442 419 442 0.98 9 13 0.049 6.7 8.8 2.3 1 23 448 470 448 470 0.94 10 13 0.00027 0.038 15.9 2.7 2 23 477 498 476 498 0.96 11 13 1.2e-06 0.00017 23.3 0.4 1 23 602 625 602 625 0.97 12 13 0.0012 0.16 13.9 5.6 1 23 631 653 631 653 0.97 13 13 5.9e-05 0.0082 18.0 2.0 1 23 659 681 659 681 0.96
Sequence Information
- Coding Sequence
- aTGGATATTCATTCCATTTGTCGTATTTGTTTGGAATATTTGCGAAATGGCACTGCATATGATTTGTTTTTAGTACCCGGATTGGCcaaaaaattgtgtatgtgCACATCATTGTCGGTGGAGCCACAGGATGGGTTTCCAAAGAATATTTGTGGGCTTTGTTACACCCGTCTCAGCGATATgtcagaatttcaaaaattatgcgTCGATTCGGTGCAGAAATTCCAAGAGTTGATAGCTAATAATTCAATTATGTGTGCGCCCACTTTTGATATTATGGAGGCACCTGCTACTGCACCTATAGAGGGAGTACAGATGCCCGAAGACGAAGATGACAACTTAAATTTCGATCCCTTGCTAACCAATCACAAAATGGAGATGTTAGAAAATGAAGAAGATGTTTTTAAGATGCTGGAAACTGTGGATAAAGAGGAAGTGGAAGAGGTAACAACAAAAGTAGAAGAAGAAGTTGTTAGTGATGAAACTAGTGAAGATGATAGGGACAGCGATGAAGACTTCCAATTTCCTGATATGGGTGATAATGATGATGACAGTGATAGCGACGATGACAAGCCCTTGGCCTCCAGAATAAGAAGtatcaaaaaagaaattaaagaagAGAATGATAAATCTGAAACTGATTCCaaggaaacaaaaattaaaccgaAACGTAAGAGAATACCAGCTGCTGAACGTCACTTGCATCGCATAATAGAGTGCCATATTTGCCATCAGAAGTTTAAAAAGACTAAAAACTATGAAGAGCATATGAAATATCACAATGACAAACTGCCATTCCAATGCGAAGTGGAAAGCTGCAAACGAGGCTTTACTACAGCTTATGGGTTGCGTTTGCATGTTGAACATTGCCACGACGAAACTGTTGAAAAGATTCCTTGCACTCAAGATGGTTGTGATATGATGTTTACACGCCGTCGTATACTCAACTGGCATTTGAAGAGGGTTCACAAACTCGCCAAGGAGGATGTACCAAAATCGTATCCATGCACTGAGTGCGAAAAGGTATTCAAGTGCCCTATGGCTttgaaaaaacatatgtttaaaCATACAGGTCAGGAATTGCCATTTCCTTGCAATATTTGTGGCAAACGTTTTGTCATCAATAGCGCTCTAAAAGATCATTTAATGCGACATGCCGGCATAAAAAACTATGTGTGTCCATATTGTGGAGTGGGTAAGACTACACGTCAAGAATGGAATACACACATTGCTACACATAACAcagaaaagaaatttaaatgccACCTTTGTCCACATGCTTCGCACAATAAGCAGAATCTGCGGATGCATGTACGAGTGGTACACGAAAAGATCAAGGACTATGCTTGCCAATATTGTGGTAAACAATTTGGCAAATCAAATGCCTGCAAAATGCACGAAATGACGCACACTGGTGAAAAGAGATGCGAATGCAAAGTATGTGGCAAACGTTTCTTATATCCGAAAGGTCTAACCAAACATTTAAAGACTCATGAGAAACGCGTGTTAAGGGCCATTGAAGTTTATCGCAAACGCCAAGTCGAATTGGGGGAAGGGCCAGCCGAAGATACTGAGCCAATGCCAGATTTACCAAATCCCGAAAACACGCAAGAATCTCATCAAAAGGTAGCAGATGAAATTCTTAAGGTTTGTGCTGATTCTGTGAATTCAATACCCAAAGATCCGAGACGCGTTGAGCGCGTGGATATTGCTGACTTAGCTGGTACCGCTGTAAATCCCATTCCTCAAGTTGCTTTGCCTTCCTGGTCTCCGCAGATTAATTTCATGATGAAAGAGGGCAAATACACCTGTCCTGATTGTGGCCAGGGTTTTAATGGTTCTGGTAATCTAAGACGCCACCACAAAATTGTACATCAAGGTGTGAAGGATTTTGCTTGTAGATATTGTCACAAGCGTTTTGCGAAGGCTCAAACGCTTAAACATCATGAAATGACACATACAGGGGAAAAACCACATGCTTGTTCACATTGTGATATGCGTTTCATTCAAGTGGTTGCTTTAAAACGTCACATGAAAGTTCACCAGGAAAGGCCCACTTACATACCTCAAGCTGCCTTCAAGGCCAAAGAAGAATTGGTTAAACAGGAGCGCAAGAAATATGCCGTTAAGCGTGAACAGCAACAGGAACGTGAAGCAATAGCCGAGGAAGCTCGCCGACAATTGGAAGAGCTTAAACGAAAGGAAGAAGAGTTACAACGACGTCAGCGCGAGGCATTAGAGAATGTGCCTAAAGCCATTCCGAAGGAACGTTTGCCACCAGGCTCTGACATTTCCATAGCCACAAATGTATTACCAAGTGATCTTGCTAGTATGTCGACTACAGATGcgactaatactaccacaaccGCTACTGATAATGAAGATCAACCATCCACCTCGGATACTGCTCTCAAGATGGAAAATCAAGAACAAGAGGATATTTCGTACCCAGAAGTTATGGGTAACTATTAA
- Protein Sequence
- MDIHSICRICLEYLRNGTAYDLFLVPGLAKKLCMCTSLSVEPQDGFPKNICGLCYTRLSDMSEFQKLCVDSVQKFQELIANNSIMCAPTFDIMEAPATAPIEGVQMPEDEDDNLNFDPLLTNHKMEMLENEEDVFKMLETVDKEEVEEVTTKVEEEVVSDETSEDDRDSDEDFQFPDMGDNDDDSDSDDDKPLASRIRSIKKEIKEENDKSETDSKETKIKPKRKRIPAAERHLHRIIECHICHQKFKKTKNYEEHMKYHNDKLPFQCEVESCKRGFTTAYGLRLHVEHCHDETVEKIPCTQDGCDMMFTRRRILNWHLKRVHKLAKEDVPKSYPCTECEKVFKCPMALKKHMFKHTGQELPFPCNICGKRFVINSALKDHLMRHAGIKNYVCPYCGVGKTTRQEWNTHIATHNTEKKFKCHLCPHASHNKQNLRMHVRVVHEKIKDYACQYCGKQFGKSNACKMHEMTHTGEKRCECKVCGKRFLYPKGLTKHLKTHEKRVLRAIEVYRKRQVELGEGPAEDTEPMPDLPNPENTQESHQKVADEILKVCADSVNSIPKDPRRVERVDIADLAGTAVNPIPQVALPSWSPQINFMMKEGKYTCPDCGQGFNGSGNLRRHHKIVHQGVKDFACRYCHKRFAKAQTLKHHEMTHTGEKPHACSHCDMRFIQVVALKRHMKVHQERPTYIPQAAFKAKEELVKQERKKYAVKREQQQEREAIAEEARRQLEELKRKEEELQRRQREALENVPKAIPKERLPPGSDISIATNVLPSDLASMSTTDATNTTTTATDNEDQPSTSDTALKMENQEQEDISYPEVMGNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01019615;
- 90% Identity
- iTF_00742148;
- 80% Identity
- -