Basic Information

Insect: Pollenia labialis
Gene Symbol: -
Assembly: GCA_949318255.1
Location: OX439141.1:31505605-31509081[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.017 2.3 10.3 0.1 3 23 15 35 13 35 0.96

2 17 0.0055 0.77 11.8 2.1 1 23 41 64 41 64 0.95

3 17 0.25 35 6.6 0.1 3 23 69 91 68 91 0.85

4 17 0.0013 0.19 13.7 0.2 1 22 99 120 99 120 0.95

5 17 3.5e-06 0.00049 21.9 0.9 1 23 128 150 128 150 0.98

6 17 0.00014 0.019 16.9 3.5 1 23 156 178 156 178 0.98

7 17 8.5e-05 0.012 17.5 1.3 1 23 184 206 184 206 0.95

8 17 0.07 9.7 8.3 1.4 2 21 213 232 212 233 0.94

9 17 0.39 55 6.0 0.2 2 23 663 685 662 685 0.95

10 17 0.36 50 6.1 0.5 1 10 709 718 709 731 0.80

11 17 0.52 73 5.6 3.2 1 23 739 763 739 763 0.92

12 17 2.6 3.6e+02 3.4 1.1 3 23 769 790 769 790 0.95

13 17 0.0069 0.96 11.5 0.2 2 21 803 822 802 823 0.93

14 17 0.00023 0.032 16.1 0.9 1 23 831 853 831 853 0.98

15 17 1.8e-05 0.0025 19.7 2.6 1 23 859 882 859 882 0.97

16 17 7.6e-05 0.01 17.7 1.3 1 23 888 910 888 910 0.98

17 17 1.3 1.8e+02 4.4 3.8 1 21 916 936 916 937 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.017	2.3	10.3	0.1	3	23	15	35	13	35	0.96
2	17	0.0055	0.77	11.8	2.1	1	23	41	64	41	64	0.95
3	17	0.25	35	6.6	0.1	3	23	69	91	68	91	0.85
4	17	0.0013	0.19	13.7	0.2	1	22	99	120	99	120	0.95
5	17	3.5e-06	0.00049	21.9	0.9	1	23	128	150	128	150	0.98
6	17	0.00014	0.019	16.9	3.5	1	23	156	178	156	178	0.98
7	17	8.5e-05	0.012	17.5	1.3	1	23	184	206	184	206	0.95
8	17	0.07	9.7	8.3	1.4	2	21	213	232	212	233	0.94
9	17	0.39	55	6.0	0.2	2	23	663	685	662	685	0.95
10	17	0.36	50	6.1	0.5	1	10	709	718	709	731	0.80
11	17	0.52	73	5.6	3.2	1	23	739	763	739	763	0.92
12	17	2.6	3.6e+02	3.4	1.1	3	23	769	790	769	790	0.95
13	17	0.0069	0.96	11.5	0.2	2	21	803	822	802	823	0.93
14	17	0.00023	0.032	16.1	0.9	1	23	831	853	831	853	0.98
15	17	1.8e-05	0.0025	19.7	2.6	1	23	859	882	859	882	0.97
16	17	7.6e-05	0.01	17.7	1.3	1	23	888	910	888	910	0.98
17	17	1.3	1.8e+02	4.4	3.8	1	21	916	936	916	937	0.94

Sequence Information

Coding Sequence: ATGTTAGTTAAATTATCCACGGATGGCGTGCCTAAACTCTTTTGCCCGGTATGCAATAAAGCCTTAGTTTCCTTAGCGGGATATGTAAAACACGTCAAAAAGCATGAACCTCCAGGAGGTTTTATATGTCGCTATTGTGAGGCCCGTTTCTGTTCCGACGATGAACTAAAAAAACATCGGGAATCTGAACATACCACAATAGCTTGTCGCCTCTGTAAAGATGTCACCTTTACTAATGAAGATGATTATCGAGCCCACATCAGGGATGTACATCAGGGCGTGGATAGAGAAATATTTACTTGTGAAAAATGTGGAGCTACTTATAAAACAGTTGATCCGTATAGAAGGCATATGGAAACAGAATGTGGTCGCATTAAACCGTACAAATGTGATAAATGCCCCATGGCATTTGTAACGAAATATAACTTGAAGCAACATTTGGAAAATCATTCGGGAGAGTTGAAATTTTGTTGCAGTTATTGTGGAAGGAATTTTAAACAGAAGGCTAGATTGGTGGAACATGAAAGGACACATACGGGAGAGAAGCCTTATAAATGTGATgTCTGTGGTAAAAGTTTTTCCCACCGTGAAAGTATCGTTACGCATTCTTCAATTCATACTGGCATACGTTTAGTAGAATGTAGAGGTTGTGGATCCAGGTTTTCCTGCTATTCTAATCTAATCAAACATCGAAGAAATCGCCCAGATACTTGCGGTTTGCCCGAGTTTGATCCTCCACGAAATCGTGTGAGAAAATATACTTCAAGAAttCCAGCCACCTTAAATCCCACCTCCGAAATCAAGGTagtaaatgttaataaaatcattaaacCTGGTGATCAGGTTAAAATGGCAGCCCTTAAAAGAGAAGCTCCTGAAAAGCatgtaaaaacaaaaccaactgCCCGCAAACGTACTGGTCTTGGACCAGCAAAATTAGCACCCACTTTGCGCAAGAGAAGtccaagaaaaaagttaattaatgcTGATGTTATCGAAGATGATAATATGAAAATAGAGGGATTCGAGGATGAGGAAGGAGACGATGAAGATAATTTTCCTCTTAAACCCAAACAgctaacagaaataaaaaatcttaatgagAATAGTATGCCACCATCAGCACCTGAAGTTAAATTGACTGAAAAGCCTTTGAAAAATCAGAATAGCACACAATGGTCTGATGATAGTGAAGATGAATATGTGCCAGATTTTGAGCCAACCGATTCCGACTCGGAAGATGATGATAAGGctcttaaagattttaaaataccACTACCAGCCGCTTCCATTAAGCAGGAAAATtgtgatgaaaatgaaaatgatGAGGAGACTATAACCACAAATATACAGATAGAACCTCTTGGGGATTTTGAATACACTCGTATGGATTCCTACTGTGCAGATGTGAAATATGAAGATGAAGAAGATAACTTGTTCGATGAAAAAGATCGTATACTAgaacatttattaaatgaaaatgattaTAGTCAATTAGGTGATGCAGGGGCGGAAAAAACTCATCAAgctaaaaggaaaaaaatacgtaatcatgaaaaaaaagaatgtcaAGACGATATTTTAAAAGAGGCTGaggtagtttttataaaatatgaagATAGTGATGAACAAGAAGATGAAAAAGATATTTTGGAAGAAAAATATAAGgcCACTGAATTTACCGAGGATGATTTAAAAGACTGCTATGTCTTACTGGAAGATGTCACCACTTGCTTTCCTGACTTAAAAGAATCTTCAACTGTAAAAGTACCACGCAATGCTCAACCTTTCTTTTCGAAatcagataaaattaaaaaattcatcaaaaaacGAGGCAAATATCGCCCTAGAAAATCAAAAGCCATTAAAGCAGAACCAGGTTCAGATGAAGATTCAAAATTAGGGAAGTCTTATCGTCTTGCTTCTATATCGGCCAAGCAGTTAAGAGAACgattgaaacttttaaaaaaacgtgATAAGTCTTGGCAATGTCCTGActgcataaaaatttattatatgcgTAAACCTTATGAAAAGCATTTAAGAGAAGACCACAAAAAGTCTGAGGAATTTATTAAGGaaatatttaaagatattttggaAGAAGTCTCCAACGAAGATGTCTTTAAGTGTCATATATGCGATAAAATCTACCTAATGGAAAAACGTTTAGTGTCGCATATACCCAAGCACGGACCAGATGGTACTCTGATACACAAATGTCCTTGTTATTGTTCTTTATATTTCCGAACAAGAGAAGAGGCTACTGCCCACGCTCAGGACAAGCATAAAGATCTGTTATGGTGTGATATATGTGAGAAATTTATGACCGGCTGCGATGCACTAAAATCGCATAAGGCGCGCATACATGGCGGCACTAAGGATCATAAAAATTCACGTAATTTGGTTTGCGTAAAATGTGGCAAAAAATTTATGGGTCGTACCCAGTTGACAGACCATGAACGATCCGATTGCGGCCGCTTGCCTTTATATCAGTGTCAGGAGTGTGGTAAATGTTTAACCACAGCTGGTATACTTAAAACTCATATGTTATTGCATAATGACGCTAGGCCATTTCAGTGTGATAAATGTGGAAAAACTTTCAAGATAAAGGCACAATACAAAACGCACATTAAATATTCCCATACAGATGAGAAGAGGTTTAAGTGTCATCTTTGTCCCAAAGAGTATCCTTATCGTGAGAGTTTACTGACCCACATGTCAGTGCATACGGGCATTAAACGTTTTATGTGCAATGGGTGTTGCAAACGTTTTACTTGTGTTTCTAATCTTCAGGCTCATCGCAAAGTTCAGGCTGACACTTGTGGTTTATTGCCTTTAAATGCTAGGGCTACTCAGTATATGGGCGTGCAGAAAGGTAATCTATTAATGGGTGCCAAACCTGAACCCGGGCTGGATTATATGGAAACTAGAACCTTTGTTGCCAAAGAGGTTATTACTCATGACCTGCCTATGGCCCAGGAACTTAATAACCAAtctagaaatatgcaacaagaTGCTTCATTAAGTGATGGTATTCCTTTAAACTATGTAACCTCGGGATCTGAAATTATACTAATGTATAATAGAGATTAA
Protein Sequence: MLVKLSTDGVPKLFCPVCNKALVSLAGYVKHVKKHEPPGGFICRYCEARFCSDDELKKHRESEHTTIACRLCKDVTFTNEDDYRAHIRDVHQGVDREIFTCEKCGATYKTVDPYRRHMETECGRIKPYKCDKCPMAFVTKYNLKQHLENHSGELKFCCSYCGRNFKQKARLVEHERTHTGEKPYKCDVCGKSFSHRESIVTHSSIHTGIRLVECRGCGSRFSCYSNLIKHRRNRPDTCGLPEFDPPRNRVRKYTSRIPATLNPTSEIKVVNVNKIIKPGDQVKMAALKREAPEKHVKTKPTARKRTGLGPAKLAPTLRKRSPRKKLINADVIEDDNMKIEGFEDEEGDDEDNFPLKPKQLTEIKNLNENSMPPSAPEVKLTEKPLKNQNSTQWSDDSEDEYVPDFEPTDSDSEDDDKALKDFKIPLPAASIKQENCDENENDEETITTNIQIEPLGDFEYTRMDSYCADVKYEDEEDNLFDEKDRILEHLLNENDYSQLGDAGAEKTHQAKRKKIRNHEKKECQDDILKEAEVVFIKYEDSDEQEDEKDILEEKYKATEFTEDDLKDCYVLLEDVTTCFPDLKESSTVKVPRNAQPFFSKSDKIKKFIKKRGKYRPRKSKAIKAEPGSDEDSKLGKSYRLASISAKQLRERLKLLKKRDKSWQCPDCIKIYYMRKPYEKHLREDHKKSEEFIKEIFKDILEEVSNEDVFKCHICDKIYLMEKRLVSHIPKHGPDGTLIHKCPCYCSLYFRTREEATAHAQDKHKDLLWCDICEKFMTGCDALKSHKARIHGGTKDHKNSRNLVCVKCGKKFMGRTQLTDHERSDCGRLPLYQCQECGKCLTTAGILKTHMLLHNDARPFQCDKCGKTFKIKAQYKTHIKYSHTDEKRFKCHLCPKEYPYRESLLTHMSVHTGIKRFMCNGCCKRFTCVSNLQAHRKVQADTCGLLPLNARATQYMGVQKGNLLMGAKPEPGLDYMETRTFVAKEVITHDLPMAQELNNQSRNMQQDASLSDGIPLNYVTSGSEIILMYNRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01261217;
90% Identity: iTF_01235988;
80% Identity: -