Basic Information

Insect: Pollenia amentaria
Gene Symbol: -
Assembly: GCA_943735935.1
Location: CALSEV010000405.1:2790198-2793879[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.018 2 10.3 0.1 3 23 44 64 42 64 0.96

2 17 0.0058 0.66 11.8 2.1 1 23 70 93 70 93 0.95

3 17 0.25 29 6.6 0.1 3 23 98 120 97 120 0.85

4 17 0.0014 0.16 13.7 0.2 1 22 128 149 128 149 0.95

5 17 3.7e-06 0.00042 21.8 0.9 1 23 157 179 157 179 0.98

6 17 0.00014 0.016 16.8 3.5 1 23 185 207 185 207 0.98

7 17 9e-05 0.01 17.5 1.3 1 23 213 235 213 235 0.95

8 17 0.074 8.4 8.3 1.4 2 21 242 261 241 262 0.94

9 17 0.41 47 5.9 0.2 2 23 689 711 688 711 0.95

10 17 0.38 43 6.1 0.5 1 10 735 744 735 757 0.80

11 17 0.55 63 5.6 3.2 1 23 765 789 765 789 0.92

12 17 2.6 2.9e+02 3.5 1.0 3 23 795 816 795 816 0.95

13 17 0.0073 0.83 11.5 0.2 2 21 829 848 828 849 0.93

14 17 0.00025 0.028 16.1 0.9 1 23 857 879 857 879 0.98

15 17 1.9e-05 0.0021 19.6 2.6 1 23 885 908 885 908 0.97

16 17 7.9e-05 0.009 17.6 1.3 1 23 914 936 914 936 0.98

17 17 1.4 1.6e+02 4.3 3.8 1 21 942 962 942 963 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.018	2	10.3	0.1	3	23	44	64	42	64	0.96
2	17	0.0058	0.66	11.8	2.1	1	23	70	93	70	93	0.95
3	17	0.25	29	6.6	0.1	3	23	98	120	97	120	0.85
4	17	0.0014	0.16	13.7	0.2	1	22	128	149	128	149	0.95
5	17	3.7e-06	0.00042	21.8	0.9	1	23	157	179	157	179	0.98
6	17	0.00014	0.016	16.8	3.5	1	23	185	207	185	207	0.98
7	17	9e-05	0.01	17.5	1.3	1	23	213	235	213	235	0.95
8	17	0.074	8.4	8.3	1.4	2	21	242	261	241	262	0.94
9	17	0.41	47	5.9	0.2	2	23	689	711	688	711	0.95
10	17	0.38	43	6.1	0.5	1	10	735	744	735	757	0.80
11	17	0.55	63	5.6	3.2	1	23	765	789	765	789	0.92
12	17	2.6	2.9e+02	3.5	1.0	3	23	795	816	795	816	0.95
13	17	0.0073	0.83	11.5	0.2	2	21	829	848	828	849	0.93
14	17	0.00025	0.028	16.1	0.9	1	23	857	879	857	879	0.98
15	17	1.9e-05	0.0021	19.6	2.6	1	23	885	908	885	908	0.97
16	17	7.9e-05	0.009	17.6	1.3	1	23	914	936	914	936	0.98
17	17	1.4	1.6e+02	4.3	3.8	1	21	942	962	942	963	0.94

Sequence Information

Coding Sequence: ATGTGGTTTAAAAATCATTTTAATTATCCTCTTGCAGCTGATACCAGTGTTGCGTCGACCTCATCAGCTGCTGCAGATCAGCAGGCAATGTTAGTTAAACTATCCACAGACGGCGTGCCCAAACTTTTTTGCCCGGTATGCAATAAAGCCTTGGTTTCCTTGGCGGGTTATGTAAAACACGTCAAAAAACATGAACCTCCAGGAGGCTTTATATGTCGCTATTGTGAGGCCCGTTTCTGTTCCGATGATGAATTAAAAAAACATCGTGAATCTGAACATACCACTATAGCTTGTCGCCTCTGCAAAGATGTCACCTTTACTACTGAAGATGATTATCGAGCCCACATCAGGGATGTACATCAGGGGGTGGATAGAGAAATATTTACTTGTGAAAAATGTGGAGCCACTTATAAAACAGTTGATCCATATAGAAGGCATATGGAAACAGAATGTGGTCGTATTAAACCGTACAAATGTGATAAATGTCCTATGGCATTTGTAACCAAATATAATTTGAAACAACATTTGGAAAATCATTCGGGAGAGTTGAAATTTTGTTGCAGTTATTGTGGAAGAAATTTTAAACAGAAGGCTAGATTGGTGGAACATGAAAGAACACATACGGGAGAGAAGCCTTACAAATGTGATGTCTGTGGTAAAAGTTTTTCCCACCGTGAAAGTATCGTTACGCATTCTTCAATTCATACTGGCATACGTTTAGTAGAATGTAGGGGATGTGGATCTAGATTTTCCTGTTATTCTAATCTTATCAAACATCGAAGAAATCGCCCCGATACTTGTGGTTTGCCCGAGTTTGATCCTCCTCGGAATCGTGTTAGAAAATATACTTCAAGAATTCCAGCCACCTTAAATCCCACCTCCGAAATCAAGGTAGTAAATGTGAATAAAATCATTAAACCCGATGATCAGGTTAAAATGGCAGCCCTTAAAAAGGAATCTCCGGAAAAGCATGTAAAAACAAAACCAACTGCCCGCAAACGCACTGGTCTTGGTCCAGCAACATCAGCACTCACTCTGCGCAAGAGAAGTCCTAGAAAAAAGTTAATTACCGAAGATGTTAACATGAAAATAGAGGGATTCGAGGATGAGGAAGAAGATGATGAAGATAATTTTCCTCTTAAACCCAAACAGAAAACAGAAATCAAAACTCTTAATGAGAATAGTATGCCACCATCAGCACTTGCATTTAAAATGTCTGATAAGCCTTTGAAAAATCAGAATAGCACACAATGGTCTGATGATAGTGAAGATGAATATGTGCCAGATTTTGAGCCAACCGATTCCGATTCGGATGATGATGATAAGGCTCTTAAAGATTTTAAAATACCACTACCAGCCGCTACCATTAAGCAGGAAAACTGTGATGAAAATGACAATGATGAGGAGGCTATAACCACAAATTTACAGATAGAACCTCTTGGGGATTTTGAATACACCCGTATGGATTCCTACTGTGCAGAGGTGAAATATGAAGATGAAGAGGATAACTTATTCGATGAAAAAGATCGTATATTGGAGCATCTGTTAAATGAAAATGATTATAGTCAATTAAGTGAAGCAGGAGCGGAAAAAACTACTCAAGTTAAAAGGAAAAAAACACGTAATGTTGAAAGAAAAGAAATTCAAGACGATATTTTAAAAGAGGCTGAGGTAGTTTTTATAAAATATGAAGATAGTGATGAGCAAGATGATGAAAAAGAAGATATTTTGAAGGAAAAATATAAGGTCACTGAAATTACCGAGGATGATTTAAAGAACTGCTACGTCTTACTGGAAGATATCACCACTTGCTTTCCCGACTTAAAAGAATCTTCAACTGTAAAAGTATCCCGCAATGCTCAACCTTTCTTTTCGAAGTCAGATAAAATTAAAAAATTCATTAAAAAACGGGGCAAATATCGCCCTAGAAAATCAAAAGCCATTAAAGCAGAACCAGGTTCAGATGAAGATTTAAAATCGGGGAAATCTTATCGTCTGGCTTCTATATCGGCCAAGCAGTTAAGAGAACGGTTGAAACTTTTGAAAAAACGTGATAAGTCGTGGCAATGTCCTGACTGTATAAAAATTTATTATATGCGTAAACCTTATGAAAAGCATTTAAGAGAAGACCATAAAAAGTCGGAGGAATTTATAAAGGAAATATTCAAAGATATTTTGGAAGAAGTCTCCAACGAAGATGTCTTTAAATGTCATATATGTGATAAAATCTACCTAATGGAAAAACGTTTAGTATCGCACATACCCAAGCACGGGCCAGATGGTACTCTGATACACAAATGTCCCTGTTACTGTTCTTTATATTTCCGAACAAGAGAAGAGGCTACTGCTCATGCTCAGGACAAGCATAAAGATCTTTTGTGGTGTGAAATATGTGAGAAATTTATGACCGGCTGCGATGCACTAAAATCGCATAAGGCTCGAATACATGGCGGCACTAAGGATCATAAAAATTCACGTAATTTGGTTTGCGTGAAATGTGGCAAAAAATTTATGGGTCGTACCCAGTTAACAGACCATGAACGATCCGACTGCGGCCGCTTGCCACTATATCAGTGTCAGGAATGTGGCAAATGTTTAACTACAGCTGGTATACTTAAAACTCATATGTTATTGCATAATGATGCTAGGCCATTTCAGTGTGATAAATGTGGCAAAACTTTTAAGATTAAGGCACAATACAAAACACACATTAAATATTCCCATACAGATGAGAAGAGGTTCAAGTGTCATCTTTGTCCCAAAGAGTATCCTTATCGTGAGAGTTTACTCACCCACATGTCAGTACATACAGGCATTAAACGTTTCATGTGCAATGGGTGTTGCAAACGTTTCACTTGTGTTTCTAATCTTCAGGCTCATCGCAAAGTTCAGGCGGACACTTGTGGTTTATTGCCTTTAAATGCTAGGGCTACTCAGTATATGGGCGTACAGAAAGGTAATCTATTAATGGGTGCCAAACCTGAACCCGGACTGGATTATGTGGAAACTAGAACCTTTGTTGCCAAAGAGGTTATTACTCATGACCTGCCCATGGCCCAGGAACTTAACAACCAATCTAGGAATATGCAACAAGATGCTGCATTAAGTGATGGTATTCCATTAAACTATGTAACCTCGGGATCTGAAATTATACTAATGTATAATAGAGATTAA
Protein Sequence: MWFKNHFNYPLAADTSVASTSSAAADQQAMLVKLSTDGVPKLFCPVCNKALVSLAGYVKHVKKHEPPGGFICRYCEARFCSDDELKKHRESEHTTIACRLCKDVTFTTEDDYRAHIRDVHQGVDREIFTCEKCGATYKTVDPYRRHMETECGRIKPYKCDKCPMAFVTKYNLKQHLENHSGELKFCCSYCGRNFKQKARLVEHERTHTGEKPYKCDVCGKSFSHRESIVTHSSIHTGIRLVECRGCGSRFSCYSNLIKHRRNRPDTCGLPEFDPPRNRVRKYTSRIPATLNPTSEIKVVNVNKIIKPDDQVKMAALKKESPEKHVKTKPTARKRTGLGPATSALTLRKRSPRKKLITEDVNMKIEGFEDEEEDDEDNFPLKPKQKTEIKTLNENSMPPSALAFKMSDKPLKNQNSTQWSDDSEDEYVPDFEPTDSDSDDDDKALKDFKIPLPAATIKQENCDENDNDEEAITTNLQIEPLGDFEYTRMDSYCAEVKYEDEEDNLFDEKDRILEHLLNENDYSQLSEAGAEKTTQVKRKKTRNVERKEIQDDILKEAEVVFIKYEDSDEQDDEKEDILKEKYKVTEITEDDLKNCYVLLEDITTCFPDLKESSTVKVSRNAQPFFSKSDKIKKFIKKRGKYRPRKSKAIKAEPGSDEDLKSGKSYRLASISAKQLRERLKLLKKRDKSWQCPDCIKIYYMRKPYEKHLREDHKKSEEFIKEIFKDILEEVSNEDVFKCHICDKIYLMEKRLVSHIPKHGPDGTLIHKCPCYCSLYFRTREEATAHAQDKHKDLLWCEICEKFMTGCDALKSHKARIHGGTKDHKNSRNLVCVKCGKKFMGRTQLTDHERSDCGRLPLYQCQECGKCLTTAGILKTHMLLHNDARPFQCDKCGKTFKIKAQYKTHIKYSHTDEKRFKCHLCPKEYPYRESLLTHMSVHTGIKRFMCNGCCKRFTCVSNLQAHRKVQADTCGLLPLNARATQYMGVQKGNLLMGAKPEPGLDYVETRTFVAKEVITHDLPMAQELNNQSRNMQQDAALSDGIPLNYVTSGSEIILMYNRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01261217;
90% Identity: iTF_01237003; iTF_01237919;
80% Identity: -