Basic Information

Insect: Pollenia labialis
Gene Symbol: -
Assembly: GCA_949318255.1
Location: OX439141.1:38134663-38136584[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00027 0.037 15.9 1.8 1 23 8 31 8 31 0.96

2 14 7.1e-06 0.00098 20.9 3.6 1 23 37 60 37 60 0.94

3 14 0.24 34 6.6 1.3 2 23 68 90 67 90 0.93

4 14 0.0001 0.014 17.3 3.4 1 23 182 204 182 204 0.98

5 14 0.0075 1 11.4 2.1 1 19 210 228 210 232 0.92

6 14 0.0023 0.32 13.0 0.5 1 20 245 264 245 266 0.89

7 14 0.0003 0.042 15.8 2.3 1 20 275 294 275 296 0.94

8 14 0.00047 0.064 15.2 0.8 1 23 329 351 329 351 0.98

9 14 0.052 7.1 8.8 0.1 1 23 357 379 357 379 0.97

10 14 0.087 12 8.1 5.4 1 23 385 407 385 407 0.99

11 14 0.00065 0.091 14.7 4.4 1 23 471 494 471 494 0.94

12 14 7.6e-05 0.011 17.7 1.9 1 23 500 522 500 522 0.97

13 14 0.00014 0.02 16.8 0.4 2 23 530 551 529 551 0.97

14 14 0.02 2.8 10.0 5.8 1 23 557 580 557 580 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00027	0.037	15.9	1.8	1	23	8	31	8	31	0.96
2	14	7.1e-06	0.00098	20.9	3.6	1	23	37	60	37	60	0.94
3	14	0.24	34	6.6	1.3	2	23	68	90	67	90	0.93
4	14	0.0001	0.014	17.3	3.4	1	23	182	204	182	204	0.98
5	14	0.0075	1	11.4	2.1	1	19	210	228	210	232	0.92
6	14	0.0023	0.32	13.0	0.5	1	20	245	264	245	266	0.89
7	14	0.0003	0.042	15.8	2.3	1	20	275	294	275	296	0.94
8	14	0.00047	0.064	15.2	0.8	1	23	329	351	329	351	0.98
9	14	0.052	7.1	8.8	0.1	1	23	357	379	357	379	0.97
10	14	0.087	12	8.1	5.4	1	23	385	407	385	407	0.99
11	14	0.00065	0.091	14.7	4.4	1	23	471	494	471	494	0.94
12	14	7.6e-05	0.011	17.7	1.9	1	23	500	522	500	522	0.97
13	14	0.00014	0.02	16.8	0.4	2	23	530	551	529	551	0.97
14	14	0.02	2.8	10.0	5.8	1	23	557	580	557	580	0.96

Sequence Information

Coding Sequence: ATGGAAAGTGCACTCCCTGGTTTTATCTGTGAATTGTGCCGAAAAACTTTTTCCCAAACATCATCGCGTAATCGACATGTTCGAGAACAACATTTGCAACCAGGTTTATACCAGTGTAAGCAGTGTGGACTTAGATTTTCAAGAAAACATAATCTACAAGTACATGTTGAACATGTAcatgcaaaaaatcttaaacaattaaaatgttcCCAATGTATAGcattctttacaaaaattactactttaaaaaaacatattaaagacCAACATGAAAGTGATGCAATTTGCGATTCCTCAAATAATGATAAGGAATTGGATATTAAAACTATAGCAGAGTCTGTATTAAAAGAGTTAAAGCAATTGCAAAAAGATATAGAACCTTTAGAAAAGGTTGTACATAATCATTTGAGCACAGAACAAGAATTTACAGATACGGAAAAGTCATCTGTAAaggattttattattaaagataaTTTATATCCATTGGGTAAATTTACTCAAATCAAAGTACAAACTATAAAACGTAAGGATggtataatatattttatatgtgaattttgtaacaaagaatttaaaaagacTTACAACTATTTAAGGCACCGAAGAATTCATACCAAAATACGtccttttatttgtgttttatgtaaaaaatcttTTCCTACTACGGCCCAACTGAAAACTCACTGTGTTTCACATAAATTTCATgatgcatttggtattttccaTAGATTGTATCAATGTCCTCagtgtaataaaagttttagcGCCATGCAACATTTTGATGAACATTTAAGCGCCGAATTAAGCAGCTGCATTGTTACTTTTAAATGTCCACAATGTTTAAAATCCTTCAAAACACTGAAAACACTTTTAAGGCACAAACATGTAGAAAAAGATAAGGAATTACAGTTACTAAAGTCCTTATTACCCAAACCTTTACCTATAggcgaaaaagaaaaatttgcccAAGATAAACCAAGTAACTTTGAATGTAATTTTTgtggtttaaaatttaaaggcaGAATATTATTAGAACAACATGAGAAACgacatgaaaatttatttaaatatcagtgTATAGAATGTCAAGCTTCATTTGCATCACAAGCTGGTTTAAAGTTTCATATTAACGTTCATtcgatttataaaaattataaatgtcaattttgtaaaaatgtttataagacAGCACAAAGTTGTCGTAGTCATATGATGacacatttaaaacttttaatagaaACAAATGAGGAATTACGAGAACGAAAATACTCTAAAGTTTCATATCCcacttttatagaaaatgagaggaaagaacaaataaaaactttgccAATTACCTTGATTAAATCTAGTAAAAAACATCGAAGTTCTCAAAAAGAAGAATCAATTAGTTCAAAGGACACATTAAAACACAAATGCTCAGAATGTGAAATGTCTTTTCGATATAAAGCCTGGTTAAAGAAACACTTTCAATATAAACATACAATACATCTACCTTTTAATTGCAGTAAATGCTTAAGAAAATTTCGAACTAAACAATCTttagaaaatcatattttgatacattcgACACAGCGTGTGAAACTCAAATGTCAAGTATGTGGAAGACAATATGCCTCtattaaatctttaaaactacACTTGAGAATACACACACAAGAGAAACCTTTTAGCTGCACGTTGTGCGATAAACAATTTCGTACCTCTGGTCATCACACACAACATTGGAAATCCAATCatcagatataa
Protein Sequence: MESALPGFICELCRKTFSQTSSRNRHVREQHLQPGLYQCKQCGLRFSRKHNLQVHVEHVHAKNLKQLKCSQCIAFFTKITTLKKHIKDQHESDAICDSSNNDKELDIKTIAESVLKELKQLQKDIEPLEKVVHNHLSTEQEFTDTEKSSVKDFIIKDNLYPLGKFTQIKVQTIKRKDGIIYFICEFCNKEFKKTYNYLRHRRIHTKIRPFICVLCKKSFPTTAQLKTHCVSHKFHDAFGIFHRLYQCPQCNKSFSAMQHFDEHLSAELSSCIVTFKCPQCLKSFKTLKTLLRHKHVEKDKELQLLKSLLPKPLPIGEKEKFAQDKPSNFECNFCGLKFKGRILLEQHEKRHENLFKYQCIECQASFASQAGLKFHINVHSIYKNYKCQFCKNVYKTAQSCRSHMMTHLKLLIETNEELRERKYSKVSYPTFIENERKEQIKTLPITLIKSSKKHRSSQKEESISSKDTLKHKCSECEMSFRYKAWLKKHFQYKHTIHLPFNCSKCLRKFRTKQSLENHILIHSTQRVKLKCQVCGRQYASIKSLKLHLRIHTQEKPFSCTLCDKQFRTSGHHTQHWKSNHQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01236990; iTF_01235977;
90% Identity: iTF_01236990;
80% Identity: -