Basic Information

Insect: Pollenia amentaria
Gene Symbol: -
Assembly: GCA_943735935.1
Location: CALSEV010000121.1:3062362-3064320[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 9.5e-07 0.00011 23.7 1.6 1 23 15 38 15 38 0.96

2 14 9.5e-06 0.0011 20.6 2.3 1 23 44 67 44 67 0.94

3 14 0.0052 0.59 11.9 0.6 2 23 75 97 74 97 0.94

4 14 6.9e-05 0.0079 17.8 4.1 1 23 193 215 193 215 0.98

5 14 0.016 1.8 10.4 3.2 1 19 221 239 221 243 0.91

6 14 0.00073 0.083 14.6 0.5 1 20 256 275 256 277 0.92

7 14 0.00044 0.051 15.3 2.5 1 20 286 305 286 307 0.95

8 14 0.014 1.6 10.6 0.5 1 23 340 362 340 362 0.98

9 14 0.064 7.2 8.5 0.2 1 23 368 390 368 390 0.97

10 14 0.0072 0.82 11.5 7.6 1 23 396 418 396 418 0.99

11 14 0.0093 1.1 11.1 4.0 1 23 482 505 482 505 0.94

12 14 0.00021 0.024 16.3 1.3 1 23 511 533 511 533 0.98

13 14 8.1e-06 0.00092 20.8 0.6 2 23 541 562 540 562 0.97

14 14 0.02 2.3 10.1 4.9 1 23 568 591 568 591 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	9.5e-07	0.00011	23.7	1.6	1	23	15	38	15	38	0.96
2	14	9.5e-06	0.0011	20.6	2.3	1	23	44	67	44	67	0.94
3	14	0.0052	0.59	11.9	0.6	2	23	75	97	74	97	0.94
4	14	6.9e-05	0.0079	17.8	4.1	1	23	193	215	193	215	0.98
5	14	0.016	1.8	10.4	3.2	1	19	221	239	221	243	0.91
6	14	0.00073	0.083	14.6	0.5	1	20	256	275	256	277	0.92
7	14	0.00044	0.051	15.3	2.5	1	20	286	305	286	307	0.95
8	14	0.014	1.6	10.6	0.5	1	23	340	362	340	362	0.98
9	14	0.064	7.2	8.5	0.2	1	23	368	390	368	390	0.97
10	14	0.0072	0.82	11.5	7.6	1	23	396	418	396	418	0.99
11	14	0.0093	1.1	11.1	4.0	1	23	482	505	482	505	0.94
12	14	0.00021	0.024	16.3	1.3	1	23	511	533	511	533	0.98
13	14	8.1e-06	0.00092	20.8	0.6	2	23	541	562	540	562	0.97
14	14	0.02	2.3	10.1	4.9	1	23	568	591	568	591	0.95

Sequence Information

Coding Sequence: ATGGAAAGCATAGGTTGTGGCACAGTTGGCACAGTCCCTGGTTTCATCTGTGAATTGTGTCGAAAAACTTTTTCCCAAAAATCATCTCTTAATCGACATGTTAGAGAACAGCATTTGCAACCAGGTTTATATCAGTGCAAACAATGTGGACTAAGATTTTCCAAAAAATATAATCTACAAGTACATGTCGAACATGTACATGCAAAAAATCGTAAACAATTAAAATGTGCCCAATGTAATGCATTCTTTACAAAAATTACCGCATTAAAAAAACACATTCAAGACCAGCATGAAAGTGATACAATTTGCGATTACTCAAATAATGATACGGAAATTGGCCAGGAATTGGATATTCAAACTCTAGCAGAGTCTGTATTAAAAGAGTTGAGGCAATTGCAAAAAGATATAGAACCTTTAGAAAATGTTGTGAATAATCATTTGGGCAAAGCACAAGAATTTACAGATACTGAAAAGTCTTCTGTAAAGGATTTTATTATTAAAGATAATTTATATCCATTGGGTAATTTTACTCAAATCAAAGTACAAACTATTAAACGTAAGGATGGTGTAATATATTTTATATGTGAATTTTGTAACAAAGAATTTAGAAAGACTTACAACTATTTAAGGCACCGAAGAACTCATACCAAAATACGTCCTTTTATTTGTGTTTTATGTAAAAAATCTTTTCCCACTACGGCCCAGCTAAAAACTCACTGTTTTTCACATAAATTTCATGATGCGTTTGGTATTTTACATAGATTTTATCAATGTCCCCAGTGCAATAAAAGTTTTAGTGCCATGCAACATTTAGATGAACATTTAAGCTCCGAATTAACCAGCTGCAACGTTACTTTTAAATGTCCACAATGTTTAAAATCCTTTAAAACACTGAAAACACTTTTAAGGCATAAACATTTAGAAAAGGATAACGAATTACAGTTACTGAAGTCATTATTACCCAAACCTTTGGTTATTTGCGAAAAAGAGAAGTTTGCCCAAGATAAACAAAGTAAATTTGAATGTAATTTTTGTGGGTTAAAACTGAAGGGCAGAATATTATTAGAACAGCATGAGAAACGACATGAAAATTTATTTAAATATCAGTGTATAGAATGTCAAGCTACATTTGCATCACAAACTGGCTTAAAGTTTCATATTAACGTTCATTCGATTTATAAAAATTATAAATGTCACTATTGTAAAAATGTATTTAAGACGGCACAAAGTTGTCGTAGTCATATGATGACTCATTTAAAACTTTTAATAGAAACAAATGAGAAATTACGAGAACGAAAATACTGTAAAGTTTCATATCCCACTTTTATAATAAATGAGAGGAAAGAACAAATAAAAACTTTGCCAATTACTTTGATTAAATCTAATAAAAAACATCGAAGCTCTCAAAAAGAAGAATCAATTAGTTCAAAGGGTACATTAAAACACAAATGCTCAGCATGTGAAATGTCTTTTCGATATAAAGCCTGGTTAAAGAAACACTTCCAATATAAACATACAACGGATCTACCTTTTGAATGCAGTAAATGCTTAAGAAAATTTCGAACTAAACAATCTTTAGGAAATCATATTTTGGTACATTCGACACAGCGTGTGAAACTTAAATGTCAAGTATGTGGAAAACAATATGCCTCTAGTAAATCTTTAAAACTTCACTTAAGAATACACACACAAGAAAAACCTTTTAGCTGTACTTTATGCGACAAACAATTTCGTACCTCTGGTCATCACATACAACATTGGAAATCGAATCATCAGGCATAA
Protein Sequence: MESIGCGTVGTVPGFICELCRKTFSQKSSLNRHVREQHLQPGLYQCKQCGLRFSKKYNLQVHVEHVHAKNRKQLKCAQCNAFFTKITALKKHIQDQHESDTICDYSNNDTEIGQELDIQTLAESVLKELRQLQKDIEPLENVVNNHLGKAQEFTDTEKSSVKDFIIKDNLYPLGNFTQIKVQTIKRKDGVIYFICEFCNKEFRKTYNYLRHRRTHTKIRPFICVLCKKSFPTTAQLKTHCFSHKFHDAFGILHRFYQCPQCNKSFSAMQHLDEHLSSELTSCNVTFKCPQCLKSFKTLKTLLRHKHLEKDNELQLLKSLLPKPLVICEKEKFAQDKQSKFECNFCGLKLKGRILLEQHEKRHENLFKYQCIECQATFASQTGLKFHINVHSIYKNYKCHYCKNVFKTAQSCRSHMMTHLKLLIETNEKLRERKYCKVSYPTFIINERKEQIKTLPITLIKSNKKHRSSQKEESISSKGTLKHKCSACEMSFRYKAWLKKHFQYKHTTDLPFECSKCLRKFRTKQSLGNHILVHSTQRVKLKCQVCGKQYASSKSLKLHLRIHTQEKPFSCTLCDKQFRTSGHHIQHWKSNHQA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01237918;
90% Identity: -
80% Identity: -