Plab001795.1
Basic Information
- Insect
- Pollenia labialis
- Gene Symbol
- MBD-R2
- Assembly
- GCA_949318255.1
- Location
- OX439139.1:34222062-34232258[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1 1.1e+04 -2.5 0.0 38 58 85 106 60 119 0.67 2 3 1.4e-19 1.5e-15 58.0 0.1 4 76 421 491 418 492 0.93 3 3 1.6 1.7e+04 -3.0 0.0 45 63 931 947 928 952 0.78
Sequence Information
- Coding Sequence
- atgGGTCGCCGGTGCTGTATAGCAGGCTGCAGTTCAACATCACGCTTGCCGGAGCATCATGGTGTTACTTATCATTCCTTTCCTTCCGATCAAAATGCACGCTCAATTTGGATACGCAATACCAAAATAAGTGCTGATCGCCACCTTACGAAAAGTGTTTTAGTGTGTTCCAGACACTTTCGGCGTGCAGACTTTCAGCCACAGCGAAGTGGTAAATATATGCTAAAGCAAAAAGTGTTTCCCACAGTATTTCCCTGGGGTAAAATAGATGCGTCCCAAATTGAAGAagatttggaatttttaaattccacAGGGACGGCAGCGCCAAGTAATTTGTTGACTACTTCCTCTACAGTAGATGAAGATACCAAAGCTACCGTGGCTGCCACTGTGGCACAGATAATGGCACAAACTGCTGAATTGAATGCAGCAGCTGGCATAAAAGTGGAAAAACCTGATGGTGGTGCGGAAGAAACTTTAAATGATGCGGCTGCAGTTAATCTATCTACACCTCCAAATGTTAAGTTTGAACCAGTGACTTCCTTTAATCCAGGAGCTCGTTTAGAGGCTCAGGACTTTGATGGCATTTGGCATACAGCACGTATTGTTGAAGTTGATAATGATGATCGTGAAGTACTTATTAAATTCGAAAAGACTGGTAAAAATAAATCCAATATAGCTGGCACCGAAGAATGGATACCTATGAATTCTTCTCGCCTTAGACAACGTATTTCCTCAAAACCCATATTCAATTTCGAATTGGAGGAGAAATGTTTGGCGCGTTGGTCGGGTCCAAGAAAATTTCCTGGCACAGTTAAGAGGATTTTACCCAATGATGTTTATGAGATTTTATTCGATGACGGTTACGTGAAGAATGTTCGTGCTATTCATATGAATAAAATGCAACCAATACCTGTGTTGGAACCAGAGGTTGTAGAGAATGTGCCGGCTGAGGTGCCTCCTATGGTACCGGTTACTCCCGCTGTCACAGTTGAAAACTCGTTGCCCTTGCCGGTAATCCCTTCTACTACTGCTGTTAAAAGACCTTCTTCTGGACAGAATTCTGGCTCACACACTAAAAAACGTGCTCCTAATGGACCAAGAAAGGATTGGCCTTTGTTGGATTTATCAAAATTGAATTTGTCTTCCCTTAATCTCCCTGAAATTCCCAAAGATGGGGAATGGACTTGTCATTGGGTTAATGATCAACCCATTGGTCGCGAAGGTTATTTGGTTGTTGGGGAACATCGTAAACCCACAGTAATAGTAGAAGATTGGCGTTTGCCTTCCGGATGGGTGAAGCATATGTATCAACGTTCCAATGTTTTGGGAAAGTGGGACGTTATTTTAGTTACACCGAATGCCAAACGTTTTAGATCAAAAGCTGACCTAAAAACTTATTTGGAAGAACTTGGTCAAGtatataatcctgacatttatGACTTTAGCATCCACCGCCGTCGAGCCAAAGATAtcaattgttatgtttataCACCCGATTATGTGCCCCAACAACCAGTAAAATCAAAGTCATCCCTAAACAGTTCTCTTGATACTAGTTTAGAAACTAAACCTTCAGATTTAGCAGGAACATTAGAGACTGTCGCGTCTCCTTATATGGATACACCTGTAGCTGAACCTTTGCCACCCATAGAGTTGTTAACAACTTCATCGAGTAGTTTAGCTGCTGAAGATAAAAGTGTGACCCAGGTAGAGGCAGAAGTACCAAAACAGTTGTTAGAATCGGCCGAAGTTAGTTCCACACCAACACCTACATCTACGCCTACAGTTGGTTTTAAAGAAGAGACTGTTGTTTCATCAGATTGTGCTACGCCTACACCTGTTGTAGCAGTAGGAACAACAACATCGGCTGTTCCAACTGTTGAAGTAACACAAAAAGTTGAGGATGGTTATGCTCTAATTGGCGGCCTAAAAGTGCAAATCATAGATAATCTATTTCGTTGTCCCCAGGAGGGCTGCTTAAAGAATTTCCGCAAAGAAAATCATTTGCAAATTCACGTTAAACATTATCATCGCAATTTAataaaATTACTTGGCTCTTGTCCCAAAATGTTGGAATTGGCCGAAAAACGCACCCATCCTGTTGACAATGATGCCGCAGAACCGGTGCCTAAAAATCAAATACCCAATCAACAATTCTTTGCTAAATTACATCAGCAAGATTTAGAACAAACCAGAGCTCATCGCAGAAGCACTGGAGCTCTAAAGAGTTTAATGGAATTACCGCCTACAGAAATTAAAACAGAACATTTGGACGAATCTTCCGTCAAATTAGAGGATAATTCACAAAATATGGATACCTCACAAAATGATACATCTATTAATAATAACACTACAACTTCTAGCGCTTTTTTGGAGAGTTCTTTTGCGTCTACAAGTGCAGCGGATGATTCAGTAATTGCAGAAACATTTGGAGCTGAGCCACCGCCCAATAAAAGATCTAGATTTTCAACCAGTAAAAGAACATCGGGTTCCCGTAAAAGTAATCGCCAAAGAACTACTAGGAAATATCTTACGGCAGCTCAGGCAACTGCAGGTGTGGTAGGAACCGTCATCCCTTTACCAATAGCACCTGATACTAGTTTCAGTGGTGTTGCTGAATTTGAAGAGACTCGCCATTCATTTAATGCTACACCAGAAATCAATAAAGATActaaaaaacgtaaaatggtGCTGCCTTCTAATACACCTCTTAGTAGCGTTGATTCTCCTATAACAGCCGATTCCGGCTCAAACTCTTTCCAGCCTCAAAATCCCACAGACATCGATATAATTAATCAACCTCCCCAATACATCAAGGAAAATggtgaattaataaaaattgtacacATGCGCCAAGAAGAAATCATTAATTGTTTGTGTGGCTACTGTGAGGAAGATGGCCTTATGTTACAATGCGAACTTTGTCTGTGTTGGCAGCATGGCCTCTGCAATGGCATTGATAAGGTCTTGCAGGTCCCTGATAAATATGTCTGCTATATATGCCGTAATCCCCAAAGGGCTCGTGAGTCTGTACGATTTAAACATGACCAAGATTGGCTGTATGAAGGCAAATTACCAGTGGCTAACTATCATGCTTCTAATTCTTCTCAGCTAAACAAAAGAGCGGAGTACCTTAAACGTTCTCATATTTTAACTGGCAACCTTTTGGAGTTGAAAAACTATATGCATTCGCTGAGAGTAAAACTTAATATAGCCAACAATAAATGTCATCCAAAACTCTATTTATGGGCTAAGAAATGGGATGAAGATAAAATCAAATCCGAACCTACAACCCCGGCCCGTCTGGTGCCAAATATACCACAACCTGAGGCACCCATAGATCCCATTGAATGCCAGCAGCGTTTAATGGAACACATTAAGATACAACAGGAATTAGTTATGGGACGTTTGGTTAAAATAGAAGCGGCCATAGATGttttggaaagTGAAGATGATTTACCTGATTTGCGTGAGGACGATTTAGGTGCCACCAAGGATGCTTTAgctgtttttattaaagaattggACACTGTTAAACTAATAGCTAAGCTTAATAGTTTGGAACATACTAAACTGGCGTATAAAAATCCCATACCTCCAGTTAAATAG
- Protein Sequence
- MGRRCCIAGCSSTSRLPEHHGVTYHSFPSDQNARSIWIRNTKISADRHLTKSVLVCSRHFRRADFQPQRSGKYMLKQKVFPTVFPWGKIDASQIEEDLEFLNSTGTAAPSNLLTTSSTVDEDTKATVAATVAQIMAQTAELNAAAGIKVEKPDGGAEETLNDAAAVNLSTPPNVKFEPVTSFNPGARLEAQDFDGIWHTARIVEVDNDDREVLIKFEKTGKNKSNIAGTEEWIPMNSSRLRQRISSKPIFNFELEEKCLARWSGPRKFPGTVKRILPNDVYEILFDDGYVKNVRAIHMNKMQPIPVLEPEVVENVPAEVPPMVPVTPAVTVENSLPLPVIPSTTAVKRPSSGQNSGSHTKKRAPNGPRKDWPLLDLSKLNLSSLNLPEIPKDGEWTCHWVNDQPIGREGYLVVGEHRKPTVIVEDWRLPSGWVKHMYQRSNVLGKWDVILVTPNAKRFRSKADLKTYLEELGQVYNPDIYDFSIHRRRAKDINCYVYTPDYVPQQPVKSKSSLNSSLDTSLETKPSDLAGTLETVASPYMDTPVAEPLPPIELLTTSSSSLAAEDKSVTQVEAEVPKQLLESAEVSSTPTPTSTPTVGFKEETVVSSDCATPTPVVAVGTTTSAVPTVEVTQKVEDGYALIGGLKVQIIDNLFRCPQEGCLKNFRKENHLQIHVKHYHRNLIKLLGSCPKMLELAEKRTHPVDNDAAEPVPKNQIPNQQFFAKLHQQDLEQTRAHRRSTGALKSLMELPPTEIKTEHLDESSVKLEDNSQNMDTSQNDTSINNNTTTSSAFLESSFASTSAADDSVIAETFGAEPPPNKRSRFSTSKRTSGSRKSNRQRTTRKYLTAAQATAGVVGTVIPLPIAPDTSFSGVAEFEETRHSFNATPEINKDTKKRKMVLPSNTPLSSVDSPITADSGSNSFQPQNPTDIDIINQPPQYIKENGELIKIVHMRQEEIINCLCGYCEEDGLMLQCELCLCWQHGLCNGIDKVLQVPDKYVCYICRNPQRARESVRFKHDQDWLYEGKLPVANYHASNSSQLNKRAEYLKRSHILTGNLLELKNYMHSLRVKLNIANNKCHPKLYLWAKKWDEDKIKSEPTTPARLVPNIPQPEAPIDPIECQQRLMEHIKIQQELVMGRLVKIEAAIDVLESEDDLPDLREDDLGATKDALAVFIKELDTVKLIAKLNSLEHTKLAYKNPIPPVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01174299;
- 90% Identity
- iTF_01235775;
- 80% Identity
- iTF_01237703;