Pgri012745.1
Basic Information
- Insect
- Pollenia griseotomentosa
- Gene Symbol
- -
- Assembly
- GCA_963931875.1
- Location
- OZ007560.1:217083413-217085299[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0023 29 6.6 0.0 12 49 246 286 236 288 0.75 2 4 0.0023 30 6.6 0.1 20 45 428 453 421 460 0.86 3 4 0.029 3.8e+02 3.1 0.1 21 43 457 479 453 484 0.88 4 4 0.0001 1.3 11.0 0.2 21 54 485 519 480 519 0.89
Sequence Information
- Coding Sequence
- atgaataaaataaacaacaaatgtCGAACATGTTTAAATGAATCTTCAAAAGGATTACAATCTCTAAAGAAAATTGCGACTGATGACAGTAATCAAGCAAAATCCTTTGCAGAACTTCTTAATGAGGTTGCAAATATTAACATACTTAATGATAAATGTCTTAAATTTCCTCAAGCCATTTGTGCGTGTTGTTCAAGGAAATTGAAAGCTGCTCATGCCTTTGTGCTGCAAGCGCAGGAAGTCAATGATAAACTTTGTTTGATGTTGTTGCCACAACAACCCGATGGAAAGCCGTTGGATTGTTTGCAAGAAGTTCAAATTGATATAGAGCCGTGTGTAGAGATTAAAACGGAACATGATAACAGTGCGGAAGGGGATGTAATGGCAGAGACAGAGTTTCAAAAAAAAGATGTACAATTAAAACAGGAAGATCTGATAGAGGACGCCCTAGCTACCGCCTGTACTAAAAATGAAGATAGaaaaattttaaaagatacccTCGATGTTACTTACCCTGATAATACCATTACCAATGAAATGTCTGATAATGAAGACAATGTTCCAACTATTTTTCAGGAATCTATGGATACATTCGATAACAATAGTAATAATTCGTCTTGTAATTCTGTATCAGATAACGATGTCGATTGGCAAAATAATTCGAACAGTTCAAGCAAAAAATcggtaaaaataaaacaaaagctttcaaaaaaaataaaaaaatcaggtAAATccgaagaaaaaaataagaagaaaagcAATGATGAGGATGAATGGTTACAAGTGAAATGTAATGAGTGTGATAAAATTTTCGACAATTCACGCCTATTGAATCAACACCTGCGACTAAATCATGTTCCAgatgaattaaaaatacaatgtCTATATTGCGAAGCAAAATTCAGTAGACGACATAATATGTATGCTCATATGCGTCGTATGCATAAAACGGAAAACCTAGAAGAGTttcaaataaaagcaaaaaaatccAATCTAGAAAAGCAATATACATGCCAACAATGTCCGCGTTCATACaccaataaatataaattaatagcTCATGTAAATAGCCATCATAATCCCGACAAAAATCCTcctaaagaaaaagttttacagCCCAAGAAACGTTTCCTATGTACGCTTTGTGGTTTAAAGTTCGATAGTACaggaaatttaaatatacacTTTCGACGTCATACTGGAGAGAAACCATTTAAGTGTGAATTCTGTGATCGAGCATATCCAAGACTATACGATGTTACTGTACATCGGCGCACTCACACTGGCGAAAAGCCATATCAATGTACTCTGTGCGAAAAGACTTTTAGAAAAtcgaataaattaaaagttcatATGCGCACACATACGAATGAACGTCCTTACAAGTGCACACAATGTGAAAAGGCATTTAAACAATCGAAAGATTTAAATATTCACAAACGTACGCATACCGGTGAAAGACCCTATAAATGTGGTGTGTGCCAAAGTACATTTACACAGAGTAATTCGTTGCGATTACATCAAATTAAACAACAGCATTTGGAAAAGCCTAATGTTCCGAATGATTTATCGggagcagcagcaacaacatttAATATGTATCAAGCAATGTAA
- Protein Sequence
- MNKINNKCRTCLNESSKGLQSLKKIATDDSNQAKSFAELLNEVANINILNDKCLKFPQAICACCSRKLKAAHAFVLQAQEVNDKLCLMLLPQQPDGKPLDCLQEVQIDIEPCVEIKTEHDNSAEGDVMAETEFQKKDVQLKQEDLIEDALATACTKNEDRKILKDTLDVTYPDNTITNEMSDNEDNVPTIFQESMDTFDNNSNNSSCNSVSDNDVDWQNNSNSSSKKSVKIKQKLSKKIKKSGKSEEKNKKKSNDEDEWLQVKCNECDKIFDNSRLLNQHLRLNHVPDELKIQCLYCEAKFSRRHNMYAHMRRMHKTENLEEFQIKAKKSNLEKQYTCQQCPRSYTNKYKLIAHVNSHHNPDKNPPKEKVLQPKKRFLCTLCGLKFDSTGNLNIHFRRHTGEKPFKCEFCDRAYPRLYDVTVHRRTHTGEKPYQCTLCEKTFRKSNKLKVHMRTHTNERPYKCTQCEKAFKQSKDLNIHKRTHTGERPYKCGVCQSTFTQSNSLRLHQIKQQHLEKPNVPNDLSGAAATTFNMYQAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01237923;
- 90% Identity
- iTF_01237923;
- 80% Identity
- iTF_01237004;