Basic Information

Insect: Pollenia griseotomentosa
Gene Symbol: -
Assembly: GCA_963931875.1
Location: OZ007560.1:122236477-122242999[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00015 0.024 16.8 0.7 1 23 64 86 64 86 0.95

2 15 0.048 8 8.9 1.2 3 23 94 114 92 114 0.95

3 15 0.00026 0.043 16.0 0.5 1 23 290 312 290 312 0.98

4 15 0.012 2 10.8 0.6 1 23 318 340 318 340 0.98

5 15 0.00024 0.039 16.2 4.4 1 21 372 392 372 394 0.94

6 15 0.013 2.1 10.7 0.3 1 23 415 437 415 437 0.94

7 15 0.02 3.3 10.1 0.3 1 23 443 466 443 466 0.97

8 15 0.35 58 6.2 0.4 5 19 477 491 474 492 0.90

9 15 6.1e-05 0.01 18.0 5.6 1 23 501 523 501 523 0.97

10 15 0.053 8.7 8.8 1.7 2 23 529 550 528 550 0.97

11 15 7.4e-05 0.012 17.8 0.2 1 23 559 581 559 581 0.98

12 15 0.007 1.2 11.5 0.2 3 23 589 609 587 609 0.97

13 15 8.4e-05 0.014 17.6 0.5 1 23 615 637 615 638 0.95

14 15 0.019 3.1 10.2 0.1 1 23 648 670 648 670 0.97

15 15 0.02 3.3 10.1 0.0 1 20 1249 1268 1249 1271 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00015	0.024	16.8	0.7	1	23	64	86	64	86	0.95
2	15	0.048	8	8.9	1.2	3	23	94	114	92	114	0.95
3	15	0.00026	0.043	16.0	0.5	1	23	290	312	290	312	0.98
4	15	0.012	2	10.8	0.6	1	23	318	340	318	340	0.98
5	15	0.00024	0.039	16.2	4.4	1	21	372	392	372	394	0.94
6	15	0.013	2.1	10.7	0.3	1	23	415	437	415	437	0.94
7	15	0.02	3.3	10.1	0.3	1	23	443	466	443	466	0.97
8	15	0.35	58	6.2	0.4	5	19	477	491	474	492	0.90
9	15	6.1e-05	0.01	18.0	5.6	1	23	501	523	501	523	0.97
10	15	0.053	8.7	8.8	1.7	2	23	529	550	528	550	0.97
11	15	7.4e-05	0.012	17.8	0.2	1	23	559	581	559	581	0.98
12	15	0.007	1.2	11.5	0.2	3	23	589	609	587	609	0.97
13	15	8.4e-05	0.014	17.6	0.5	1	23	615	637	615	638	0.95
14	15	0.019	3.1	10.2	0.1	1	23	648	670	648	670	0.97
15	15	0.02	3.3	10.1	0.0	1	20	1249	1268	1249	1271	0.93

Sequence Information

Coding Sequence: ATGTTGCAAACAGATCTCAAATGGACTGGCTTGGGTTTCAACGCAATATTGCTCAATTTTACTTGCGAAACTATACCCAGAAGAGTTGAAATACCTGCAGAACAAATACTTGGATCAAGTTCCCAAGTGCTGCTAGACATTGAAGTTCCTCTGCCTACTGTGCAAGATGAATACACTGCCCTACGACCATACCCGTGTGATTTTTGTAGTAGACGTTTTCGTAAAAAAGCCAGTTTAATGAATCATATGGTGGCCCATCAAACTGATCGACCACACTTGTGTAAATTATGTGGTGCCAGATTTCTTAGGAGACAGGATCTTATTAATCATCTTAAAGGACATGCAGATGAACCAACAGAACAACCACAACTGGATGATAGTGATTacATACATTTCGTTACCGATACTACTTCCTCTTCACAACGTACTTCCAATGATCATTATTATGAACAAGATTGGAGTGTACCAGAGGATTCGGTTACCATACCAACAAAATCTAGTCGTAAACATCAACAACACCTTCAACATATTACCTCCATTTCTAATCAACATAATGTAATGATGGAAAACACTTTAACACCGTTTTCTTCGGATGTACTTACATCTACACAAACAACTGAAGTACCACCTAGAGGACGTATAAGTCGACTTAAACCCAAGGAGGATACCTCATATGTGGTGGAAGTACCAAATAATTGCTCGTCAAATGAAATGATTATTACATCGGCTTATAGCATTGCAGAGTGTGATACTTTGTCAGCAAATACCGCAGCTGTTAAACTTTCTCAGGATATTACACCCGCCCTGGTAGATAACAATGAAGGACAAAATGTTATACACTATCCTGTAATAGACGACAGCAAACCATTTGTTTGCCAACAATGTGGTTTGGCCTTTTCTAGAGAAAAAGCCATGCTTTCACATACAAAGaCACATCGTAATGATTCTCCTTTTGAGTGCTCTCAATGTAATGAGCTATTTTGGGATCAAAATAGTTTGCAAGACCATCAGAAATCCCATCAATTTGAAGAGAGTAATTCTGAATACGATCCCAACGAAGGAGAAGATGAAACCCAAACCGAATCTGAGTCCGAACAACAGTTGTATGGAGAGTTTTATTGTAGTGAATGTGGCATGTCCTTTTATCGCCAGGATTTACTGAAAAGACATACAAAATGTCATGACAAGGGAAGTGGAAACACTAGCCAAACTAATAACAATGGCATGGAAAATACAGATCAACATTGTTGCAATACATGTGGTGAGACGTTTGCCGAAGCCTTAGACTTGCTGGCCCATGCCGAAATACATGCACGTTACCCGCCTTTCAAatgTGTCTTATGCGGTGAGTCTTTCTTTGAGGAACCCACTATCCAAAAACATTTACAATCCCAGCATCCTAATGAAATCACCGAAAATACTTGTATTTTATGTGGAAAAGAGTGTCGCGATCGTAAAGCTTTAATGAAACATGCCTGGGATCATTCTCGTGAAAAATGTCACTCCTGTTCGAAATGTGGCAAAAGTTTTCACAACAAGGCCCGCCTTAAGCGTCATATGGCCTCACATCGTGATAAGTCCGTACAATGTGATGTCTGTCATGAAGAATTTCCCGATGGTCGTACTCTTTCCAATCACCGCCATTCACACAGTGCCACTTCAGCGGGTAAGCTGTTTCCCTGTCTTGAATGTGGTAAAACATTCGGCTCCCGAAGTTCTCAACAAATTCATGTACGCATACATACTGGCGAAAGGCCTTATGGGTGCCGTTTTTGTTGGAAAGCCTTTGCCGATGGTGGTACTTTACGGAAACATGAACGTATTCATACAGGGGAAAAGCCTTATGCTTGTTCTGTGTGCCCACGCGCTTTTAACCAACGTGTGGTGCTAAGAGAGCATATACGATCACATCATTCGGGTTTGGATGCTAAAAGAGGTACTTACTATTGTACAGTTTGTAGTGCTGAGTTGTCGTCGTCAGGAGACTTGATACAACATTTAATACAACACAGTGATATGAATACAGCTATGCAGAGGCAACCGGTGACTGGGCCCCGTAAATATAAACGACGACGTAAATTAAAACCTCATGAGTTGGCACGTTTAAAACGGGAGTACAAACAAAATGGTGGTAATGGTAGTGACCTTGATTTATCAGACTTCGATATAGACAATGTCGATGATTTGTTAGCCATGACAACAGACAGTAATACTGCCTTAGAAACAGCAACGGGGGTCCTGGAAACCCCAACCAATCAACAAGGAAAGACAACCAAAAGCAAACAAGTCATCTCTATTGCGCACAACGAAAGCAATAATAGAAATAAAGTCGCACCAAATAGTCAAAAATCACACATTTTAGAAGAACAAGATGTTTTTGATTTGGATGTCGGTTTAGAAAATGAAACACTGATAAAACAACGTTTTAACTCCACGGGAAGTGATAAAATTTGGCCAACAAAACAGACTGAAGATAGCTACAAGTCCTTATTATCAAATTTAGAGACCACACTTCAAAGTATAGATACTTTAGTAGTGGGTCCTTCAGCAAAAACCACCAATATTGAAGAAAACAGTAAGCCCGAGTCGCAACAGCGCCACACAAAgcgtaaaataaaacaagaaaatacctctACAGCTCAGAGAACACAACAGGTTCAGTTAACGAGATTAGACAAAGAATTGCCAACAACATCGACAAATGGCAGAGGTCGTAAGGGCAAAACAACAGGCGTGAAACAGTCTAAAGGCCCGCAAATGATTCATACAGAAAGATCTATCATTACAACTAGCGATAATGGTATGAGGTTAACAGGGTCCAGTGgcagaaagaaaaataaatccaTTATTACACGCACCCAAACCACAAATCTTGATTCACTCCCTAAAACTTCGGCAATAGTCGACGATTATGATATTATCTCGCCTGCCTTGCAACCGCCTAAACAAATTAGCTCTAGTCCTTTGCATATAAAACAGGAACAAGACAATCACAACTACCGTCATCACCATTCACAACAACACCATCTAACGAAAAACCCGCCAAATACGAATCACAATACATCTGCTCGAACACAAACCACCACCCGCCATACAAATGCTAATGATCTCTATGATGCCCATTTATTGCTAGATGCCTCTTGTTTACGCAACGATCTTGATGAATTTCTCAGATCTCCCTCAAAGTCCGATAAATCCAGGCAACGTTTTACCAGCGAATCTTCTACGCAATTTTTAGCTGAACAATCGGAAGAAGAACAACATATGATCAAAATAGAACCAACATCTCCCGATCTAAGAGAAATAGTTAATGGTGCTAGTTCAATTAATACTTCCTCCGCCCAAGGAGCTTTGGAATTGGAAGTCACTTCTACTAAAAGtcgtaaaaacaacaaatccaACCGAACTCAAAGGGCGGTAAATTCAAATCGCAAATATTTGGAGTTCACCACTGAGGTCGCTAGTCTAAATAAACGATCCTCTACAAGTTGTATAACTTCAAAATCATCAAAGTCTGCTAGAACTGAACCAGCCAAATCTCTGAAGTCTGTACAAGATACTTCAACCACAACTTCGTATTTAGATTATACCATTGTAGATACTTTTAATACGGTTACAAGTTCCTCAGCAAACAATAATTCCTTCGCTTCTATCTCGGCTATTGTTTCGGCAGCCGATGCTTCTGCTGCTGCTCAACAAAACTCCTCCGCTGCTGTTGCCAGTGTTCGTAAACCTCAACGCTATTTTGAGTGCGAAATGTGTAGCGCTATATTTTCGGATCGTGCTCAACTATTGGATCATGTAccaatacatatttaa
Protein Sequence: MLQTDLKWTGLGFNAILLNFTCETIPRRVEIPAEQILGSSSQVLLDIEVPLPTVQDEYTALRPYPCDFCSRRFRKKASLMNHMVAHQTDRPHLCKLCGARFLRRQDLINHLKGHADEPTEQPQLDDSDYIHFVTDTTSSSQRTSNDHYYEQDWSVPEDSVTIPTKSSRKHQQHLQHITSISNQHNVMMENTLTPFSSDVLTSTQTTEVPPRGRISRLKPKEDTSYVVEVPNNCSSNEMIITSAYSIAECDTLSANTAAVKLSQDITPALVDNNEGQNVIHYPVIDDSKPFVCQQCGLAFSREKAMLSHTKTHRNDSPFECSQCNELFWDQNSLQDHQKSHQFEESNSEYDPNEGEDETQTESESEQQLYGEFYCSECGMSFYRQDLLKRHTKCHDKGSGNTSQTNNNGMENTDQHCCNTCGETFAEALDLLAHAEIHARYPPFKCVLCGESFFEEPTIQKHLQSQHPNEITENTCILCGKECRDRKALMKHAWDHSREKCHSCSKCGKSFHNKARLKRHMASHRDKSVQCDVCHEEFPDGRTLSNHRHSHSATSAGKLFPCLECGKTFGSRSSQQIHVRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSGLDAKRGTYYCTVCSAELSSSGDLIQHLIQHSDMNTAMQRQPVTGPRKYKRRRKLKPHELARLKREYKQNGGNGSDLDLSDFDIDNVDDLLAMTTDSNTALETATGVLETPTNQQGKTTKSKQVISIAHNESNNRNKVAPNSQKSHILEEQDVFDLDVGLENETLIKQRFNSTGSDKIWPTKQTEDSYKSLLSNLETTLQSIDTLVVGPSAKTTNIEENSKPESQQRHTKRKIKQENTSTAQRTQQVQLTRLDKELPTTSTNGRGRKGKTTGVKQSKGPQMIHTERSIITTSDNGMRLTGSSGRKKNKSIITRTQTTNLDSLPKTSAIVDDYDIISPALQPPKQISSSPLHIKQEQDNHNYRHHHSQQHHLTKNPPNTNHNTSARTQTTTRHTNANDLYDAHLLLDASCLRNDLDEFLRSPSKSDKSRQRFTSESSTQFLAEQSEEEQHMIKIEPTSPDLREIVNGASSINTSSAQGALELEVTSTKSRKNNKSNRTQRAVNSNRKYLEFTTEVASLNKRSSTSCITSKSSKSARTEPAKSLKSVQDTSTTTSYLDYTIVDTFNTVTSSSANNNSFASISAIVSAADASAAAQQNSSAAVASVRKPQRYFECEMCSAIFSDRAQLLDHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00259964;
90% Identity: iTF_01237936;
80% Identity: -